New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396401	155 (1.010)	56 (0.360)	5/130	22.8	0.24	coding (283/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1398037 =	199 (0.840)					intergenic (+341/+1557)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

ACCAGACAAACGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..........................................................................  >  NC_014034/1396356‑1396401 .................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGTAAGCGGTGCA  >  NC_014034/1398037‑1398075                                               |||||||||||||||||||||||||||||||||||                                        atgtggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGC                     >  1:3664871/9‑101 (MQ=0)  tgtggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCG                    >  1:4582085/8‑101 (MQ=0)  tgtggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCG                    <  2:179084/94‑1 (MQ=0)   gtggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGg                   >  1:4033887/7‑100 (MQ=0)   gtggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGT                   <  2:385988/95‑1 (MQ=0)   gtggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGT                   <  2:346820/95‑1 (MQ=0)   gtggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGT                   >  1:784051/7‑101 (MQ=0)   gtggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGT                   >  1:4130066/7‑101 (MQ=0)   gtggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGT                   >  2:2093478/7‑101 (MQ=0)   gtggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGT                   >  1:3416150/7‑101 (MQ=0)    tggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTG                  >  1:475159/6‑101 (MQ=0)     ggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGG                 <  2:4249747/97‑1 (MQ=0)     ggtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGG                 <  1:3237825/97‑1 (MQ=0)      gtcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGA                >  1:955449/4‑101 (MQ=0)       tcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGAT               <  1:3310514/99‑1 (MQ=1)       tcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGAT               <  2:2323403/99‑1 (MQ=1)       tcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGAT               >  2:2472358/3‑101 (MQ=1)       tcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGAT               >  2:2662702/3‑101 (MQ=1)       tcAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGAT               >  1:1142741/3‑101 (MQ=1)        cAACACTGTCGCTCCCCCCGCGGGGGCGTGGATTGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATC              <  1:4087114/100‑1 (MQ=0)        cAACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATC              <  2:1669496/100‑1 (MQ=1)         AACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCG             <  1:3070719/101‑1 (MQ=1)         AACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCG             >  1:2689009/1‑101 (MQ=1)         AACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCG             >  2:2775942/1‑101 (MQ=1)         AACACTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCG             >  2:1380891/1‑101 (MQ=1)          acacgGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGa            <  2:1715945/96‑2 (MQ=0)          acaCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGa            >  2:2395214/4‑100 (MQ=1)           tctTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaa           <  2:2091458/98‑3 (MQ=1)           caCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaa           <  1:550018/99‑3 (MQ=1)           caCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaa           <  2:4401029/99‑3 (MQ=1)           caCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaa           >  1:1234552/3‑99 (MQ=1)            aCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA          >  2:2757744/2‑101 (MQ=1)            aCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA          >  2:367611/2‑101 (MQ=1)             CTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc         >  2:3294759/1‑100 (MQ=1)             CTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc         >  1:2421597/1‑100 (MQ=1)             CTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc         >  1:3794378/1‑100 (MQ=1)              TGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGTGGCGTGGATCGAAAct        >  2:1324000/1‑99 (MQ=1)              TGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct        >  2:3866929/1‑99 (MQ=1)              TGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct        <  2:364363/101‑3 (MQ=1)              TGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct        >  1:163142/1‑99 (MQ=1)              TGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct        <  2:4389553/101‑3 (MQ=1)              TGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct        >  2:3341761/1‑99 (MQ=1)              TGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAGa        >  1:2091579/1‑100 (MQ=1)               GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActc       >  2:3054506/1‑98 (MQ=11)               GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActc       <  1:3162291/101‑4 (MQ=11)               GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActc       >  1:3769728/1‑98 (MQ=11)                TCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcg      >  2:2521528/1‑97 (MQ=31)                 CGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcgg     >  1:1440715/1‑96 (MQ=14)                 CGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcgg     >  2:1789389/1‑96 (MQ=14)                 CGCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcgg     <  2:519228/101‑6 (MQ=14)                  GCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggc    >  2:3613733/1‑95 (MQ=11)                  GCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggc    <  1:3065801/101‑7 (MQ=11)                  GCTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggc    >  1:3969387/1‑95 (MQ=11)                   CTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcc   <  2:3733892/101‑8 (MQ=11)                   CTCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcc   <  2:4465160/101‑8 (MQ=11)                    TCCCCCCGCGGGGGCGTGGATCGAAACGCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcct  >  2:1726268/1‑93 (MQ=14)                                               |||||||||||||||||||||||||||||||||||                                        ACCAGACAAACGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..........................................................................  >  NC_014034/1396356‑1396401 .................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGTAAGCGGTGCA  >  NC_014034/1398037‑1398075 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG