New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1397034 =161 (1.060)83 (0.550) 37/128 6.9 0.39 coding (916/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 = 1397797 98 (0.410)intergenic (+101/+1797) RCAP_rcc01307/RCAP_rcc01309 hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

Only 100 of 169 total aligned reads displayed.

TTTCGATCCACGCCCCCGCGGGGGGAGCGACGACATGTGCTCGCGCCCCATCACTCAAGACGGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC........................................................................................................................................  <  NC_014034/1397130‑1397034
.....................................................................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCGCCCGCGGGGGGAGCGACCT  <  NC_014034/1397797‑1397698
                                                                                                 ||||||||||||||||||||||||||||||||||||                                                                                                    
                                                        gcgccgggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGG                                                                              <  2:1068479/92‑1 (MQ=2)
                                                          gccgggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGG                                                                            <  1:1065256/94‑1 (MQ=11)
                                                          gccgggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGG                                                                            <  2:2576631/94‑1 (MQ=11)
                                                          gccgggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGG                                                                            <  2:3118724/94‑1 (MQ=11)
                                                            cgggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                          <  2:2872970/96‑1 (MQ=11)
                                                            cgggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                          >  1:3759135/6‑101 (MQ=11)
                                                             gggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGGGGGGGGAGC                                                                         >  2:4527387/5‑101 (MQ=11)
                                                             gggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                         >  2:4240967/5‑101 (MQ=11)
                                                              ggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                        <  1:2873885/98‑1 (MQ=11)
                                                               gtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                       >  2:3482098/3‑101 (MQ=1)
                                                                tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                      >  1:4304786/2‑101 (MQ=1)
                                                                tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                      >  1:1695312/2‑101 (MQ=1)
                                                                 GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACT                                                                     <  2:2697263/101‑1 (MQ=1)
                                                                  TTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTG                                                                    <  2:3627265/101‑1 (MQ=1)
                                                                  TTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTG                                                                    <  1:3846703/101‑1 (MQ=1)
                                                                   TTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGA                                                                   >  1:2985863/1‑101 (MQ=1)
                                                                    TCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAA                                                                  <  1:4356952/101‑1 (MQ=1)
                                                                     CGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAAT                                                                 >  2:3329326/1‑101 (MQ=1)
                                                                     CGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAAT                                                                 >  2:1402220/1‑101 (MQ=1)
                                                                     CGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAAT                                                                 >  2:2278787/1‑101 (MQ=1)
                                                                      GATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATC                                                                >  1:632628/1‑101 (MQ=1)
                                                                        TCCACGCCCCCGCGGGGGGAGCGACCCCCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTT                                                              <  1:2527969/101‑1 (MQ=1)
                                                                        TCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTT                                                              <  1:3306872/101‑1 (MQ=1)
                                                                         CCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTG                                                             <  2:1038370/101‑1 (MQ=1)
                                                                          CACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGA                                                            <  1:3084491/101‑1 (MQ=1)
                                                                          CACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGA                                                            <  2:195259/101‑1 (MQ=1)
                                                                           ACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGAC                                                           >  2:3989083/1‑101 (MQ=1)
                                                                            CGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACG                                                          <  2:4474589/101‑1 (MQ=1)
                                                                             GCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGT                                                         <  2:423121/101‑1 (MQ=1)
                                                                               CCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGC                                                       <  2:496891/101‑1 (MQ=1)
                                                                                CCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCT                                                      >  2:4628314/1‑101 (MQ=1)
                                                                                 CCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTG                                                     <  2:183115/101‑1 (MQ=1)
                                                                                  CGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGt                                                    >  2:29837/1‑100 (MQ=1)
                                                                                  CGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGA                                                    <  2:2634116/101‑1 (MQ=1)
                                                                                    CGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGCCTGAATCTTGACGTGCTGATG                                                  <  1:2690654/101‑1 (MQ=1)
                                                                                    CGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATG                                                  >  2:3904900/1‑101 (MQ=1)
                                                                                    CGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATG                                                  <  1:661930/101‑1 (MQ=1)
                                                                                     GGGGGGTGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATag                                                 >  2:3775789/1‑99 (MQ=1)
                                                                                     GGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGA                                                 >  2:1335690/1‑101 (MQ=1)
                                                                                     GGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGAGGGGGGAGCGACTGAATCTTGACGTGCTGCTGA                                                 >  1:4107170/1‑101 (MQ=0)
                                                                                      GGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAG                                                <  1:4617801/101‑1 (MQ=1)
                                                                                       GGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGC                                               <  2:632564/101‑1 (MQ=1)
                                                                                       GGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGC                                               >  1:1209776/1‑101 (MQ=1)
                                                                                        GGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCG                                              >  1:823139/1‑101 (MQ=1)
                                                                                         GGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGC                                             >  1:239767/1‑101 (MQ=1)
                                                                                              GACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAG                                        <  2:4370180/101‑1 (MQ=1)
                                                                                               ACCACCGTCTTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGA                                       <  1:2217655/101‑1 (MQ=0)
                                                                                                 CACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACA                                     <  2:2061649/101‑1 (MQ=1)
                                                                                                 CACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACA                                     >  1:2767391/1‑101 (MQ=1)
                                                                                                    CGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGT                                  <  1:2476182/101‑1 (MQ=1)
                                                                                                    CGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGT                                  <  2:3758900/101‑1 (MQ=1)
                                                                                                     GGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTT                                 >  2:1432407/1‑101 (MQ=1)
                                                                                                     GGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTT                                 >  2:3292592/1‑101 (MQ=1)
                                                                                                      GCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTT                                <  1:1429608/101‑1 (MQ=1)
                                                                                                      GCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTT                                <  2:694546/101‑1 (MQ=1)
                                                                                                       CCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTC                               <  2:1498725/101‑1 (MQ=1)
                                                                                                        CTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGNGCGTCAGACAAGGTTCG                              >  2:399583/1‑101 (MQ=1)
                                                                                                        CTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              >  1:4398502/1‑101 (MQ=1)
                                                                                                        CTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              >  1:2436871/1‑101 (MQ=1)
                                                                                                        CTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              <  1:116680/101‑1 (MQ=1)
                                                                                                        CTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              <  1:4662566/101‑1 (MQ=1)
                                                                                                         TTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGA                             >  1:4560840/1‑101 (MQ=1)
                                                                                                          TACCCAGATCGGCGATGTCTTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGAT                            <  2:4722173/101‑1 (MQ=1)
                                                                                                          TACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGAT                            >  2:927962/1‑101 (MQ=1)
                                                                                                          TACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGAT                            >  1:1478758/1‑101 (MQ=1)
                                                                                                            CCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCC                          <  1:3212707/101‑1 (MQ=1)
                                                                                                            CCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCC                          <  1:741483/101‑1 (MQ=1)
                                                                                                            CCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCC                          >  1:3638452/1‑101 (MQ=1)
                                                                                                            CCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCC                          <  1:3905142/101‑1 (MQ=1)
                                                                                                             CCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCA                         <  1:1335782/101‑1 (MQ=1)
                                                                                                              CAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCAC                        <  2:3630978/101‑1 (MQ=1)
                                                                                                               AGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAGTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACG                       >  2:2235723/1‑101 (MQ=1)
                                                                                                               AGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACG                       >  1:3426020/1‑101 (MQ=1)
                                                                                                                GATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGC                      <  1:418505/101‑1 (MQ=1)
                                                                                                                    GGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGGGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCC                  >  2:3970256/1‑101 (MQ=0)
                                                                                                                    GGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCC                  >  1:1578423/1‑101 (MQ=1)
                                                                                                                     GCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCc                 <  1:2476762/101‑2 (MQ=1)
                                                                                                                     GCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCG                 >  1:3046532/1‑101 (MQ=1)
                                                                                                                     GCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCG                 >  2:3205469/1‑101 (MQ=1)
                                                                                                                     GCGATCTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCG                 <  1:399627/101‑1 (MQ=0)
                                                                                                                      CGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGC                >  1:3275980/1‑101 (MQ=1)
                                                                                                                        ATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGG              >  1:4439531/1‑101 (MQ=1)
                                                                                                                        ATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGG              >  1:523110/1‑101 (MQ=1)
                                                                                                                        ATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGG              >  1:3191231/1‑101 (MQ=1)
                                                                                                                          GTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGACTCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGG            >  2:4284421/1‑101 (MQ=0)
                                                                                                                          GTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGG            >  2:3832343/1‑101 (MQ=1)
                                                                                                                          GTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGG            <  1:3138297/101‑1 (MQ=1)
                                                                                                                          GTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGG            >  1:4520794/1‑101 (MQ=1)
                                                                                                                          GTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGG            >  1:1586760/1‑101 (MQ=1)
                                                                                                                           TCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGG           >  1:335965/1‑101 (MQ=1)
                                                                                                                             CTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGA         >  1:3571695/1‑101 (MQ=1)
                                                                                                                             CTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGA         <  2:1758057/101‑1 (MQ=1)
                                                                                                                              TTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAG        <  1:928039/101‑1 (MQ=1)
                                                                                                                               TGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGC       <  2:44552/101‑1 (MQ=1)
                                                                                                                                   GAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC   <  2:2985675/101‑1 (MQ=1)
                                                                                                                                   GAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC   <  1:2783944/101‑1 (MQ=1)
                                                                                                                                   GAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC   >  2:1140981/1‑101 (MQ=1)
                                                                                                                                   GAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC   >  2:861632/1‑101 (MQ=1)
                                                                                                                                   GAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTAACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC   >  2:2424071/1‑101 (MQ=0)
                                                                                                                                    AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACat  >  2:2367337/1‑99 (MQ=1)
                                                                                                 ||||||||||||||||||||||||||||||||||||                                                                                                    
TTTCGATCCACGCCCCCGCGGGGGGAGCGACGACATGTGCTCGCGCCCCATCACTCAAGACGGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC........................................................................................................................................  <  NC_014034/1397130‑1397034
.....................................................................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCGCCCGCGGGGGGAGCGACCT  <  NC_014034/1397797‑1397698

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG