New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1397632 =	174 (1.100)	41 (0.260)	6/134	22.4	0.23	coding (1514/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397797	98 (0.410)					intergenic (+101/+1797)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

GGAACTCTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC...........................................................................  <  NC_014034/1397675‑1397632 .............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGA  <  NC_014034/1397797‑1397756                                             |||||||||||||||||||||||||||||||||                                           gccccggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGG                    >  2:3002206/8‑101 (MQ=0)  ccccggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGG                   >  1:2188209/7‑101 (MQ=0)  ccccggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGG                   >  1:4606846/7‑101 (MQ=0)   cccggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGG                  <  2:2816436/96‑1 (MQ=1)   cccggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGG                  <  1:2689073/96‑1 (MQ=1)    ccggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGA                 >  2:832246/5‑101 (MQ=1)     cggTGTAGTTTCGATCCACGCCCCCGCGGTGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCTACGCCCCCGCGGGGGGAG                <  2:802017/98‑1 (MQ=0)     cggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAG                <  2:1027487/98‑1 (MQ=1)     cggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAG                >  1:4446980/4‑101 (MQ=1)     cggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAG                >  1:3614395/4‑101 (MQ=1)     cggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAG                <  1:1196683/98‑1 (MQ=1)      ggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  2:360535/99‑1 (MQ=1)      ggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  2:3148072/99‑1 (MQ=1)      ggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  1:738416/99‑1 (MQ=1)      ggTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  2:540992/99‑1 (MQ=1)       gTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCG              <  2:3670647/100‑1 (MQ=1)       gTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCG              >  2:2162605/2‑101 (MQ=1)        TGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA             >  2:1301156/1‑101 (MQ=1)        TGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA             >  2:2572451/1‑101 (MQ=1)         GTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGCGCGAC            >  1:444856/1‑101 (MQ=1)           AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcg          >  2:3392494/1‑99 (MQ=1)           AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcg          >  1:783361/1‑99 (MQ=1)            GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcgg         >  2:539112/1‑98 (MQ=1)            GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcgg         >  2:853049/1‑98 (MQ=1)            GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcgg         >  1:332461/1‑98 (MQ=1)            GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcgg         >  1:4547005/1‑98 (MQ=1)             TTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggg        <  2:3920125/101‑5 (MQ=1)             TTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggg        <  1:3889733/101‑5 (MQ=1)               TCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGGGCGACcggggc      >  1:3354320/1‑95 (MQ=0)               TCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggggc      <  1:1367746/101‑7 (MQ=1)               TCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggggc      <  2:3681033/101‑7 (MQ=1)               TCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggggc      <  2:3398284/101‑7 (MQ=1)               TCGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggggc      <  2:2799351/101‑7 (MQ=1)                CGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGGGCGACcggggcc     >  1:1592462/1‑94 (MQ=0)                CGATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggggcc     >  2:479052/1‑94 (MQ=1)                 GATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggggcca    <  1:3397895/101‑9 (MQ=0)                  ATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggggccaa   >  1:4183820/1‑92 (MQ=0)                  ATCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggggccaa   <  2:4681699/101‑10 (MQ=0)                   TCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggggccaat  <  1:4660915/101‑11 (MQ=0)                   TCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggggccaat  <  2:1594426/101‑11 (MQ=0)                   TCCACGCCCCCGCGGGGGGAGCGACCACGTCCAGCGCATAGGCCGTTGCCGGGTCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGATCcacg  <  2:3892539/101‑5 (MQ=0)                                             |||||||||||||||||||||||||||||||||                                           GGAACTCTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC...........................................................................  <  NC_014034/1397675‑1397632 .............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGA  <  NC_014034/1397797‑1397756 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG