New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	158228 =	76 (0.330)	59 (0.260)	28/194	16.1	0.51	intergenic (+31/‑199)	parC/tuf1	DNA topoisomerase IV subunit A/translation elongation factor Tu
	?	NC_014034	= 2330172	39 (0.160)					intergenic (+147/+165)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

CCGCCTGCCAGGGCAGCGCGCGTCCCCGAAACGACACGTCCGGGGGGCACCTTGCTTTTCCTTGGCAAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGC....................................................................................................  <  NC_014034/158328‑158228 ...................................................................................................CGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGAA  <  NC_014034/2330172‑2330073                                                                                                                                                                                                                                                                     ttcttggcgcAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGG                                             >  2:4380998/11‑101 (MQ=32)                                                          ttcttggcgcAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGG                                             >  1:1565363/11‑101 (MQ=32)                                                           tcttggcgcAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGC                                            >  2:407956/10‑101 (MQ=32)                                                            cttggcgcAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCG                                           >  2:2985986/9‑101 (MQ=32)                                                             ttggcgcAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGC                                          >  1:370614/8‑101 (MQ=32)                                                             ttggcgcAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGC                                          >  1:2948450/8‑101 (MQ=32)                                                              tggcgcAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCT                                         >  2:1078889/7‑101 (MQ=32)                                                              tggcgcAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCACT                                         >  1:2989077/7‑101 (MQ=17)                                                              tggcgcAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCCTGCGGCGCT                                         >  2:1982500/7‑101 (MQ=17)                                                               ggcgcAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTC                                        >  1:1519482/6‑101 (MQ=32)                                                                  gcAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGC                                     >  2:216482/3‑101 (MQ=1)                                                                   cAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                    >  1:341432/2‑101 (MQ=1)                                                                   cAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAACTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                    >  1:4177584/2‑101 (MQ=1)                                                                     AATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCG                                  >  2:3350148/1‑101 (MQ=1)                                                                      ATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGC                                 >  2:3663484/1‑101 (MQ=1)                                                                       TACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGGCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTCCGCGCC                                >  1:1631429/1‑101 (MQ=0)                                                                        ACGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCG                               >  1:620307/1‑101 (MQ=1)                                                                         CGCCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGAGCTCTGCGCGCCGT                              >  1:831232/1‑101 (MQ=1)                                                                           CCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTG                            >  2:2828506/1‑101 (MQ=1)                                                                           CCGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTG                            >  2:958609/1‑101 (MQ=1)                                                                            CGGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGC                           >  1:3599696/1‑101 (MQ=1)                                                                             GGGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCC                          >  1:459868/1‑101 (MQ=1)                                                                              GGGGTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCG                         >  1:3451276/1‑101 (MQ=1)                                                                                 GTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCC                      >  1:102601/1‑101 (MQ=1)                                                                                 GTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCC                      >  1:3589829/1‑101 (MQ=1)                                                                                 GTGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCC                      >  1:289190/1‑101 (MQ=1)                                                                                  gGCGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCT                     <  1:2158956/100‑1 (MQ=1)                                                                                   ggGGGGGCGGCC.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                    <  2:1089427/99‑1 (MQ=0)                                                                                    gGGGGGCTGCC.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTG                   <  2:459824/100‑1 (MQ=0)                                                                                    gGGGGGCGGAG.CGCCCGTCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTG                   <  2:4261945/100‑1 (MQ=0)                                                                                    CGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTG                   >  1:3323225/1‑101 (MQ=1)                                                                                    CGGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTG                   >  2:3801639/1‑101 (MQ=1)                                                                                     GGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                  >  1:479193/1‑101 (MQ=1)                                                                                     GGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                  <  1:3196873/101‑1 (MQ=1)                                                                                     GGGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCCCCGTTGCCGCCCTTGG                  >  1:3519346/1‑101 (MQ=1)                                                                                      GGGGCGGGGCCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                  <  2:2202597/101‑1 (MQ=1)                                                                                      GGGGCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGC                 >  1:3475737/1‑101 (MQ=1)                                                                                         GCGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGA              >  1:3085843/1‑101 (MQ=1)                                                                                          ggggccCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGA              <  2:2589074/95‑1 (MQ=1)                                                                                          CGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAG             >  2:1744987/1‑101 (MQ=1)                                                                                          CGGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAG             >  1:753159/1‑101 (MQ=1)                                                                                           GGAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG            >  2:3801561/1‑101 (MQ=1)                                                                                            gcG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGC           <  2:494278/99‑1 (MQ=1)                                                                                            gcG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGC           <  1:932480/99‑1 (MQ=1)                                                                                            gaccCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG            <  2:1092243/97‑1 (MQ=1)                                                                                            GAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGCGGC           >  2:665626/1‑101 (MQ=1)                                                                                            GAG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGC           >  1:2753167/1‑101 (MQ=1)                                                                                             cG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCC          <  2:1953408/100‑1 (MQ=1)                                                                                             AG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCC          >  1:1978681/1‑101 (MQ=1)                                                                                             AG.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGCGCGGCGCTCTGCGCGCCGTTGCCGCGCTTGGCGGAGGCC          >  2:3898903/1‑101 (MQ=0)                                                                                              G.CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA         >  1:302174/1‑101 (MQ=1)                                                                                               cCCCCCGCCGGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA         <  2:1865817/100‑1 (MQ=1)                                                                                               cCCCCCACCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA         <  1:2702409/100‑1 (MQ=1)                                                                                                CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGGGGCCAA        >  1:1117481/1‑101 (MQ=1)                                                                                                CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAA        >  1:1840779/1‑101 (MQ=1)                                                                                                 CCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAG       <  1:7118/101‑1 (MQ=1)                                                                                                 CCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAG       >  1:426481/1‑101 (MQ=1)                                                                                                  CCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC      <  2:3696737/101‑1 (MQ=1)                                                                                                   CCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCC     >  1:2639075/1‑101 (MQ=1)                                                                                                                                                                                                            CCGCCTGCCAGGGCAGCGCGCGTCCCCGAAACGACACGTCCGGGGGGCACCTTGCTTTTCCTTGGCAAAATACGCCGGGGGTGCGGGGGCGGAG.CCCCCGC....................................................................................................  <  NC_014034/158328‑158228 ...................................................................................................CGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGAA  <  NC_014034/2330172‑2330073 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG