New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1610454229 (1.040)2 (0.010) 2/186 31.4 0.01 coding (318/474 nt) RCAP_rcc01487 glutathione‑dependent formaldehyde‑activating enzyme family protein
?NC_014034 3494562 = 213 (0.900)coding (2805/3855 nt) RCAP_rcc03301 diguanylate cyclase/phosphodiesterase
Rejected: Position hash score below cutoff.

AAATCGCGCGCTGCCCCAGCTGCCGCGTCGCCGTCTTCAGCCATTATGCCGGGGCAGGGCGGGCGCTGGCCTTTGTCCGCGTCGGCACGCTGGACAGCCCCGCCGCC....................................................................................................  >  NC_014034/1610348‑1610454
....................................................................................................CGCCGCCGATCCGCGCCGCGAAATCGCCGCCGCGCAATTCGGCGCGCAGCACATCGGCGACGCGCTGCAGCACCATGTCCCCGGCCTCGTGGCCCAGCGTGTCGTTG  >  NC_014034/3494562‑3494661
                                                                                                                                                                                                               
                                                           CGGGCGCTGGCCTTTGTCCGCGTCGGCACGCTGGACAGCCCCGCCGCCGATCCGCGCCGCGAAATCGCCGCCGCGCAATTCGGCGCGCAGCACATCGGCGA                                                 >  2:4226975/1‑101 (MQ=255)
                                                                           TCCGCGTCGGCACGCTGGACAGCCCCGCCGCCGATCCGCGCCGCGAAATCGCCGCCGCGCAATTCGGCGCGCAGCACATCGGCGACGCGCTGCAGCACCAT                                 <  1:4227222/101‑1 (MQ=255)
                                                                                                                                                                                                               
AAATCGCGCGCTGCCCCAGCTGCCGCGTCGCCGTCTTCAGCCATTATGCCGGGGCAGGGCGGGCGCTGGCCTTTGTCCGCGTCGGCACGCTGGACAGCCCCGCCGCC....................................................................................................  >  NC_014034/1610348‑1610454
....................................................................................................CGCCGCCGATCCGCGCCGCGAAATCGCCGCCGCGCAATTCGGCGCGCAGCACATCGGCGACGCGCTGCAGCACCATGTCCCCGGCCTCGTGGCCCAGCGTGTCGTTG  >  NC_014034/3494562‑3494661

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG