New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 2148786198 (0.880)3 (0.010) 2/190 31.8 0.02 coding (211/369 nt) RCAP_rcc01992 hypothetical protein
?NC_014034 = 2537923 194 (0.820)coding (1085/1185 nt) RCAP_rcc02366 NnrS family protein
Rejected: Position hash score below cutoff.

CCTCGTGCTCTGGACGATCTCCGACACCGGCGGGCTGCTCCTCTCCGGCCCCGATGGCATTTCCCGCGGCCGGGTCCAGGTCGATTGCTACGGCGAGAGCTATG....................................................................................................  >  NC_014034/2148683‑2148786
...................................................................................................CTATGTCGCGGCGATGCTGAGCGCGGCGGCGCTCTGGGTGCTGGCTTTTGCGCTTTTCGCGCTCAGCTCTGCGCCCGCTTTCCTGGGTCCGCGTCAAACCCCTTG  <  NC_014034/2537923‑2537824
                                                                                                                                                                                                            
         CTGGACGATCTCCGACACCGGCGGGCTGCTCCTCTCCGGCCCCGATGGCATTTCCCGCGGCCGGGTCCAGGTCGATTGCTACGGCGAGAGCTATNNGNCGn                                                                                                >  1:2205965/1‑100 (MQ=255)
                                           TCCGGCCCCGATGGCATTTCCCGCGGCCGGGTCCAGGTCGATTGCTACGGCGAGAGCTATGTCGCGGCGATGCTGAGCGCGGCGGCGCTCTGGGTGCTGGC                                                              >  1:4606653/1‑101 (MQ=255)
                                                                 GCGGCCGGGTCCAGGTCGATTGCTACGGCGAGAGCTATGTCGCGGCGATGCTGAGCGCGGCGGCGCTCTGGGTGCTGGCTTTTGCGCTTTTCGCGCTCAGC                                        <  2:4606400/101‑1 (MQ=255)
                                                                                                                                                                                                            
CCTCGTGCTCTGGACGATCTCCGACACCGGCGGGCTGCTCCTCTCCGGCCCCGATGGCATTTCCCGCGGCCGGGTCCAGGTCGATTGCTACGGCGAGAGCTATG....................................................................................................  >  NC_014034/2148683‑2148786
...................................................................................................CTATGTCGCGGCGATGCTGAGCGCGGCGGCGCTCTGGGTGCTGGCTTTTGCGCTTTTCGCGCTCAGCTCTGCGCCCGCTTTCCTGGGTCCGCGTCAAACCCCTTG  <  NC_014034/2537923‑2537824

Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG