New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221956 =281 (1.210)45 (0.190) 6/196 28.3 0.11 coding (701/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222079 464 (1.960)coding (578/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC.................................................................................................  <  NC_014034/222055‑221956
......................................................................................................CGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAC  <  NC_014034/222079‑221985
                                                                                                    ||                                                                                               
CGACCGATCCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                  <  1:2421466/101‑1 (MQ=0)
CGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                  <  2:2083820/101‑1 (MQ=9)
CGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                  >  1:1594337/1‑101 (MQ=2)
CGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                  <  2:334238/101‑1 (MQ=9)
CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                  <  2:91739/101‑1 (MQ=14)
CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCC                                                                                                  <  1:857194/101‑1 (MQ=1)
CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                  <  2:819618/101‑1 (MQ=1)
CGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                  <  1:2283450/101‑1 (MQ=0)
 GACCGATCGCACGGATCCGACCGAACCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCa                                                                                                 <  2:1422039/101‑2 (MQ=2)
 GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCa                                                                                                 >  1:1405026/1‑100 (MQ=11)
 GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATACCC                                                                                                 >  1:4064772/1‑101 (MQ=14)
 GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCa                                                                                                 <  1:3403063/101‑2 (MQ=1)
 GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCa                                                                                                 <  1:4694308/101‑2 (MQ=1)
 GACCGATCCCACAGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCC                                                                                                 >  1:3394711/1‑101 (MQ=11)
  ACCGATCCCACGGATCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATTCCac                                                                                                <  2:4015863/101‑3 (MQ=9)
  ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCac                                                                                                <  1:4199693/101‑3 (MQ=1)
  ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCac                                                                                                <  1:2601931/101‑3 (MQ=1)
  ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCC                                                                                                >  1:1411483/1‑101 (MQ=1)
    CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCaggg                                                                                              >  2:958749/1‑97 (MQ=0)
     GATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGA                                                                                             >  1:3433806/1‑101 (MQ=255)
       TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCCCGGAtc                                                                                           >  1:295406/1‑99 (MQ=9)
        CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGCACCC                                                                                          >  2:3528519/1‑101 (MQ=2)
         CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCCCGGACCCc                                                                                         >  1:3599967/1‑100 (MQ=9)
           ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGCTCCCACGGACCCGACCGATCCCCCGGACCCGAC                                                                                       >  1:3262008/1‑101 (MQ=12)
             GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACag                                                                                     >  2:2776466/1‑99 (MQ=0)
             GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCCCGGACCCGACCG                                                                                     >  1:1013341/1‑101 (MQ=9)
               acCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCCCGGACCCAACCGAT                                                                                   >  1:774913/3‑101 (MQ=2)
               acCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCGACCGAc                                                                                   >  1:3621651/3‑100 (MQ=9)
               ATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCGACCGAc                                                                                   >  1:2533486/1‑100 (MQ=255)
                ctCGACCGGTCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATC                                                                                  <  2:4594831/99‑1 (MQ=0)
                cCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATC                                                                                  >  2:2489107/2‑101 (MQ=1)
                TCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCAGGGACCCCACCGATC                                                                                  >  2:830766/1‑101 (MQ=0)
                 CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC                                                                                 >  1:753498/1‑101 (MQ=1)
                 CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC                                                                                 >  2:3553891/1‑101 (MQ=1)
                   GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGCTCCca                                                                               >  1:1943252/1‑99 (MQ=0)
                   GACCGACCCCGCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCca                                                                               <  1:4192967/101‑3 (MQ=0)
                    ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCaag                                                                              >  2:1508036/1‑98 (MQ=0)
                       GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGA                                                                           >  2:2038318/1‑101 (MQ=1)
                        acCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCTACGGAC                                                                          >  1:704244/3‑101 (MQ=17)
                         TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACC                                                                         <  2:1962683/101‑1 (MQ=1)
                           CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                       >  1:862607/1‑101 (MQ=0)
                              CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACC                                                                    >  1:688230/1‑101 (MQ=0)
                               GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                                   >  2:3422012/1‑101 (MQ=0)
                                   CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCC                                                               <  2:2392900/101‑1 (MQ=1)
                                    CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCC                                                              >  2:4427883/1‑101 (MQ=1)
                                     gtCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCA                                                             <  1:4328513/99‑1 (MQ=1)
                                       CCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACG                                                           <  1:3462245/101‑1 (MQ=1)
                                        CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGATCCAACGGACCCGACCGATCCCACGG                                                          >  2:288719/1‑101 (MQ=0)
                                          ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGAc                                                        >  2:39172/1‑100 (MQ=1)
                                           TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGAcc                                                       <  1:4320920/101‑3 (MQ=14)
                                                       GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCc                                           >  1:4157652/1‑100 (MQ=1)
                                                       GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCA                                           <  2:2714609/101‑1 (MQ=1)
                                                         CCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACG                                         <  1:2776631/101‑1 (MQ=1)
                                                         CCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACG                                         >  2:4654727/1‑101 (MQ=1)
                                                            acCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCAACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAC                                      >  1:2418973/3‑101 (MQ=0)
                                                            ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAt                                      >  1:2817621/1‑100 (MQ=1)
                                                             TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACC                                     >  1:4735382/1‑101 (MQ=1)
                                                               atctGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG                                   <  2:422644/97‑1 (MQ=0)
                                                                            CGATCCCCCGGACCCGACCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGG                      <  2:2115072/101‑1 (MQ=0)
                                                                               TCCCACGGACCCGACCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAcc                   <  2:3730102/101‑3 (MQ=0)
                                                                                    CGGACCCGACCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACC              <  2:1762608/101‑1 (MQ=2)
                                                                                              CGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGG    <  2:4197021/101‑1 (MQ=0)
                                                                                                ATCCTCCGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAt  <  1:4364250/101‑2 (MQ=2)
                                                                                                    ||                                                                                               
CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC.................................................................................................  <  NC_014034/222055‑221956
......................................................................................................CGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAC  <  NC_014034/222079‑221985

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG