New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	221983 =	769 (4.320)	48 (0.270)	2/150	28.2	0.09	coding (674/2748 nt)	RCAP_rcc00185	hypothetical protein
	?	NC_014034	= 222128	198 (0.830)					coding (529/2748 nt)	RCAP_rcc00185	hypothetical protein
Rejected: Position hash score below cutoff.

ACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC..................................................................................  <  NC_014034/222076‑221983 .......................................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCG  <  NC_014034/222128‑222072                                                                                               |||||||||||||||||||||||||                                                          ACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACCGAT                                                                             >  1:3068629/1‑101 (MQ=0)  tCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCAGGGACCCCACCGATC                                                                            >  2:830766/2‑101 (MQ=0)             ccACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                 >  1:862607/3‑101 (MQ=0)                CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACC                                                              >  1:688230/1‑101 (MQ=0)                 GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                             >  2:3422012/1‑101 (MQ=0)                     CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCC                                                         <  2:2392900/101‑1 (MQ=1)                      CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCC                                                        >  2:4427883/1‑101 (MQ=1)                      CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCC                                                        <  1:857194/101‑1 (MQ=1)                         CCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACG                                                     <  1:3462245/101‑1 (MQ=1)                            ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGAC                                                  >  2:39172/1‑101 (MQ=1)                             TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACC                                                 <  1:4320920/101‑1 (MQ=14)                              CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                <  1:958826/101‑1 (MQ=17)                              CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                <  1:561595/101‑1 (MQ=17)                               CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                               <  1:2538148/101‑1 (MQ=17)                               CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                               <  1:4450684/101‑1 (MQ=17)                                 ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGAC                                             <  1:3840851/101‑1 (MQ=17)                                   GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCG                                           <  1:2049638/101‑1 (MQ=17)                                   GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCG                                           >  1:410156/1‑101 (MQ=14)                                   GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCG                                           >  1:1835270/1‑101 (MQ=14)                                     acCCGACCGATCCCACGGACCCGACCGATCCCACGTACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGAT                                         >  2:2016277/3‑101 (MQ=2)                                     acCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGAT                                         >  2:2973638/3‑101 (MQ=11)                                      cCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATC                                        >  2:2167918/2‑101 (MQ=12)                                       CCGACCGAGCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCC                                       <  1:4566681/101‑1 (MQ=0)                                        cgcCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                      <  2:3622579/98‑1 (MQ=0)                                        CGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCg                                      >  1:3994935/1‑100 (MQ=12)                                         GACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCga                                     >  2:3700368/1‑99 (MQ=2)                                         GACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCga                                     >  1:572425/1‑99 (MQ=9)                                         GACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCga                                     >  1:1358016/1‑99 (MQ=9)                                         GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCc                                     >  1:626391/1‑100 (MQ=0)                                         GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCc                                     >  1:4157652/1‑100 (MQ=1)                                         GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCA                                     <  2:2714609/101‑1 (MQ=1)                                          cCCGATCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC                                    <  1:2516983/100‑1 (MQ=0)                                           CCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACG                                   <  1:2776631/101‑1 (MQ=1)                                           CCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACG                                   >  2:4654727/1‑101 (MQ=1)                                              cTCCCTCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAT                                <  2:4485385/100‑1 (MQ=0)                                              ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGAc                                <  1:3343089/101‑2 (MQ=9)                                              ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAT                                >  1:2817621/1‑101 (MQ=1)                                               TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAcc                               >  1:4735382/1‑99 (MQ=1)                                                 CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACTGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCc                             <  1:4664898/101‑2 (MQ=0)                                                 CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCc                             >  2:384442/1‑100 (MQ=1)                                                   ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCAC                           <  1:3554110/101‑1 (MQ=0)                                                    CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACC                          >  1:171/1‑101 (MQ=0)                                                    CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACC                          <  1:167116/101‑1 (MQ=0)                                                     GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCG                         >  2:4119051/1‑101 (MQ=17)                                                      GACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGA                        >  1:4651185/1‑101 (MQ=0)                                                      GACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGA                        <  1:3028671/101‑1 (MQ=0)                                                         CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCC                     <  2:4667861/101‑1 (MQ=17)                                                            ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCGAC                  >  2:4502363/1‑101 (MQ=17)                                                                ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGAC              >  2:4701903/1‑101 (MQ=17)                                                                   CCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG           <  1:1051058/101‑1 (MQ=9)                                                                           CCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCC   >  2:2329151/1‑101 (MQ=0)                                                                            CGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc  >  1:2963273/1‑100 (MQ=0)                                                                            CGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc  >  2:2859411/1‑100 (MQ=0)                                                                                               |||||||||||||||||||||||||                                                          ACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC..................................................................................  <  NC_014034/222076‑221983 .......................................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCG  <  NC_014034/222128‑222072 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG