New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 222079 =458 (2.010)39 (0.170) 2/192 31.9 0.10 coding (578/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222128 249 (1.050)coding (529/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC...................................................................  <  NC_014034/222170‑222079
................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGAT  <  NC_014034/222128‑222066
                                                                                            ||||                                                               
CTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCCAC                                                            >  1:1238091/1‑101 (MQ=1)
                                  cgACCGGCCCCACGGCCCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCC                          <  2:4132508/99‑1 (MQ=2)
                                    acggGCCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC                        <  1:2240935/97‑1 (MQ=9)
                                       gcCCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGA                     <  2:3617790/99‑1 (MQ=11)
                                       gaCCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGA                     <  1:1611686/99‑1 (MQ=2)
                                       gaCCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGA                     >  2:2847933/3‑101 (MQ=0)
                                        aCCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCTACGGAC                    >  1:704244/2‑101 (MQ=17)
                                         tCCCACGGACCCGACCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACC                   <  2:3730102/100‑1 (MQ=0)
                                         tCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACC                   <  1:4320920/100‑1 (MQ=14)
                                         tCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACC                   <  2:1962683/100‑1 (MQ=1)
                                         CCCCACGGACCCGACCCATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACC                   <  2:2607875/101‑1 (MQ=0)
                                          CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                  <  1:958826/101‑1 (MQ=17)
                                          CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                  <  1:561595/101‑1 (MQ=17)
                                          CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAaat                  >  2:175912/1‑98 (MQ=2)
                                          CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAACCCACGGACCC                  >  2:167132/1‑101 (MQ=0)
                                           cagCGGACCCGAACGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG                 <  1:1145023/98‑1 (MQ=0)
                                           CCACGGACCCGGCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG                 <  1:3344695/101‑1 (MQ=0)
                                           CCACGGACCCGACCGATCCCACGGGCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG                 <  1:3353336/101‑1 (MQ=0)
                                           CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCAGACCGATCCCACGGACCCG                 >  2:1310079/1‑101 (MQ=1)
                                           CCACGGACCCGACCGATCCCACGGATCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG                 <  1:2134945/101‑1 (MQ=1)
                                           CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG                 <  1:3340548/101‑1 (MQ=0)
                                           CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                 <  1:4450684/101‑1 (MQ=17)
                                           CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                 <  1:2538148/101‑1 (MQ=17)
                                           CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                 >  1:862607/1‑101 (MQ=0)
                                           CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG                 <  1:2549540/101‑1 (MQ=1)
                                           CCACGGACCCGACCGAGCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG                 <  2:232010/101‑1 (MQ=1)
                                            gACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGACCCGc                >  2:1685907/2‑100 (MQ=1)
                                            CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATNCCACGGCCCCGACCGATCCCACGGACCCGA                >  1:3149275/1‑101 (MQ=0)
                                            CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCca                >  1:2560138/1‑99 (MQ=0)
                                            CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGA                <  2:3201480/101‑1 (MQ=1)
                                             ACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC               <  1:1990185/101‑1 (MQ=0)
                                             ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGAC               >  1:568346/1‑101 (MQ=1)
                                             ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC               >  2:3918527/1‑101 (MQ=1)
                                             ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCccc               >  1:2308094/1‑98 (MQ=0)
                                             ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCcaa               >  1:3826118/1‑98 (MQ=0)
                                             ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCACACGGACCCGAC               >  2:2164536/1‑101 (MQ=0)
                                              ctggCCCGACCGATCCCACGGACCCGACCGTTCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACc              <  2:816109/97‑2 (MQ=0)
                                              cgcACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACc              <  2:4421274/98‑2 (MQ=0)
                                               GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAgac             >  1:422688/1‑98 (MQ=0)
                                                          ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCGACCGAc  >  1:2315626/1‑100 (MQ=1)
                                                                                            ||||                                                               
CTGTCCGGCGGCGGCGACAGCGGTCCGACCGATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC...................................................................  <  NC_014034/222170‑222079
................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGAT  <  NC_014034/222128‑222066

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 40 ≤  ATCG