New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2287727	2 (0.010)	20 (0.130)	9/126	19.1	0.25	intergenic (‑124/+111)	RCAP_rcc02125/acsA1	hypothetical protein/acetate‑‑CoA ligase
	?	NC_014034	= 2490469	119 (0.500)					intergenic (‑82/+10)	soxD/soxB	sarcosine oxidase subunit delta/sarcosine oxidase subunit beta
Rejected: Position hash score below cutoff.

GTAGCGGCGGGGGTTTCACACCCCCGCACCCCCGTGG............................................................................  >  NC_014034/2287691‑2287727 ..........................................................................CCCTTTCATCTTGCCCGAAATATCCCGCGGGGGTCCGGG  <  NC_014034/2490469‑2490431                                      |||||||||||||||||||||||||||||||||||||                                        taAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCATCTTGCCCGAAATATCCCG              <  1:3477584/99‑1 (MQ=255)     ctGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGG          <  1:4713147/99‑1 (MQ=255)      tGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGG         <  2:2628921/100‑1 (MQ=255)      tGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGG         >  1:54923/2‑101 (MQ=255)       GCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGG        >  1:2061258/1‑101 (MQ=255)        CGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGg       >  2:3364767/1‑100 (MQ=255)        CGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGT       <  2:1077310/101‑1 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTg      >  1:765279/1‑100 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTg      >  2:2074815/1‑100 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTg      <  2:3727253/101‑2 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCCCGGGGGgg      >  1:612506/1‑99 (MQ=255)          GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga     >  1:2958116/1‑99 (MQ=255)          GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga     >  1:4215123/1‑99 (MQ=255)          GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga     >  1:2280406/1‑99 (MQ=255)          GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga     <  2:1631898/101‑3 (MQ=255)           GGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaa    <  2:2973545/101‑4 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat   <  1:3258386/101‑5 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat   <  1:2630880/101‑5 (MQ=255)             GTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaatt  >  1:37165/1‑96 (MQ=255)             GTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaatt  >  1:4354462/1‑96 (MQ=255)                                      |||||||||||||||||||||||||||||||||||||                                        GTAGCGGCGGGGGTTTCACACCCCCGCACCCCCGTGG............................................................................  >  NC_014034/2287691‑2287727 ..........................................................................CCCTTTCATCTTGCCCGAAATATCCCGCGGGGGTCCGGG  <  NC_014034/2490469‑2490431 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG