New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2330296 =	48 (0.250)	9 (0.050)	3/164	28.4	0.10	intergenic (+271/+41)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	= 2577291	107 (0.450)					intergenic (+213/‑216)	fdx/purU	ferredoxin VI/formyltetrahydrofolate deformylase
Rejected: Position hash score below cutoff.

TCGACCGGGGAACAGCGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGC....................................................................................................  <  NC_014034/2330408‑2330296 ...............................................................................................CGGCGACCCGCCGGGGGCTCCG.CCCCGGACCCCCGGGATATTTTGGGCAAGATAAAAGGGGCCCGGGGTCCTGAGGCCTTCGGTCCTGCCGGGGACGGCTTTGGCTTTTCCTGGTGC  <  NC_014034/2577291‑2577193                                                                                                                                                                                                                                       GGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCG                                                                                                  >  2:785142/1‑101 (MQ=1)                  GGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGGTCCG.C                                                                                                >  2:309089/1‑101 (MQ=1)                     GATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGGGCCG.CCCC                                                                                             >  1:1948011/1‑101 (MQ=0)                      ATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCA.CCCCc                                                                                            >  1:2170131/1‑100 (MQ=1)                           GAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACC                                                                                        >  2:2244012/1‑101 (MQ=1)                            AAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCC                                                                                       >  2:3196672/1‑101 (MQ=1)                             AGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGGTCCGCCCCCGGACCCC                                                                                      >  2:590176/1‑101 (MQ=1)                                     ACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATct                                                                              >  2:540983/1‑99 (MQ=1)                                       CTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTT                                                                            >  1:1548351/1‑101 (MQ=1)                                                                                                                                                                                                                       TCGACCGGGGAACAGCGGGTGATCCCGAAGAAGGCGACCTTCGGATCCCTGTCCGCGGGCGGTCTTTACTAAGGGATTTCGCCGAGGCGATGCCTCGGCGACCCGCCGGGGGC....................................................................................................  <  NC_014034/2330408‑2330296 ...............................................................................................CGGCGACCCGCCGGGGGCTCCG.CCCCGGACCCCCGGGATATTTTGGGCAAGATAAAAGGGGCCCGGGGTCCTGAGGCCTTCGGTCCTGCCGGGGACGGCTTTGGCTTTTCCTGGTGC  <  NC_014034/2577291‑2577193 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG