New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	3049036 =	181 (0.830)	2 (0.010)	2/184	31.3	0.01	coding (2016/3477 nt)	RCAP_rcc02857	diguanylate cyclase/phosphodiesterase
	?	NC_014034	= 3563704	228 (0.960)					coding (97/597 nt)	RCAP_rcc03367	hypothetical protein
Rejected: Position hash score below cutoff.

CGCGGCGGACATCGCCGGTGACATCGTGCAGCGCCCCGGTCCAGACCACGGTGCCATCGGGCTGCGGCTTGGCCGTCGCCGAATTCGACAGCCAGACCGCGCCGCGC....................................................................................................  <  NC_014034/3049142‑3049036 ...................................................................................................CGCCGCGCCGCTCAGATGCCGAAACGGATCAAGCCCCACCGCCCAGCCCGCAAAGACCAGGATCAGATCCGCGCTGCCCCGCCGCTGCAACCAGTCTGCCCGCATCAC  <  NC_014034/3563704‑3563605                                                                                                                                                                                                                          CATCGCCGGTGACATCGTGCAGCGCCCCGGTCCAGACCACGGTGCCATCGGGCTGCGGCTTGGCCGTCGCCGAATTCGACAGCCAGACCGCGCCGCGCCGC                                                                                                   >  1:1769653/1‑101 (MQ=255)           ATCGCCGGTGACATCGTGCAGCGCCCCGGTCCAGACCACGGTGCCATCGGGCTGCGGCTTGGCCGTCGCCGAATTCGACAGCCAGACCGCGCCGCGCCGCg                                                                                                  >  1:3956578/1‑100 (MQ=255)                                                                                                                                                                                                                 CGCGGCGGACATCGCCGGTGACATCGTGCAGCGCCCCGGTCCAGACCACGGTGCCATCGGGCTGCGGCTTGGCCGTCGCCGAATTCGACAGCCAGACCGCGCCGCGC....................................................................................................  <  NC_014034/3049142‑3049036 ...................................................................................................CGCCGCGCCGCTCAGATGCCGAAACGGATCAAGCCCCACCGCCCAGCCCGCAAAGACCAGGATCAGATCCGCGCTGCCCCGCCGCTGCAACCAGTCTGCCCGCATCAC  <  NC_014034/3563704‑3563605 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG