New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	392448 =	46 (0.210)	22 (0.100)	10/186	24.4	0.28	intergenic (‑96/+47)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	1732717 =	70 (0.300)					intergenic (‑141/‑262)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

AGAGCGAAGCTTTGACGCGGGACCGGCGGCCGGATTTGTGGGAGAAGTTCGGCAAGTGATTTCGCCTCGGCTGCGCCGAGGCGACCC.GCCGGGGGCTCCGCCCCCG...................................................................................................  <  NC_014034/392553‑392448 ....................................................................................................GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTA  >  NC_014034/1732717‑1732815                                                                                                                                                                                                                                                                                               GGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTC                            <  2:2878167/101‑1 (MQ=39)                                                                                 GCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCA                           <  1:4643268/101‑1 (MQ=39)                                                                                   gacccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAAC                         <  2:3416920/93‑1 (MQ=38)                                                                                    acccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACA                        <  2:4549111/94‑1 (MQ=37)                                                                                         ggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAA                   <  2:1474527/99‑1 (MQ=31)                                                                                         ggCGGGGGCTCCCCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAA                   <  1:629747/99‑1 (MQ=14)                                                                                           CGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGG                 <  1:1660418/101‑1 (MQ=1)                                                                                           CGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGG                 >  1:1893090/1‑101 (MQ=1)                                                                                            GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGG                >  1:1662326/1‑101 (MQ=1)                                                                                            GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGG                >  1:293147/1‑101 (MQ=1)                                                                                            GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGG                <  1:646600/101‑1 (MQ=1)                                                                                              GGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTCCAGCCGCATGCCGTCCGCGTCAACAGGAAAGGCCC              >  2:3403051/1‑101 (MQ=0)                                                                                               GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCC             >  1:3091719/1‑101 (MQ=1)                                                                                               GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCC             >  1:1647900/1‑101 (MQ=1)                                                                                                  TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGC          <  1:4478887/101‑1 (MQ=1)                                                                                                  TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGC          >  2:370854/1‑101 (MQ=1)                                                                                                  TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGC          >  2:4394394/1‑101 (MQ=1)                                                                                                   CCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCT         >  2:527429/1‑101 (MQ=1)                                                                                                   CCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCT         >  2:666707/1‑101 (MQ=1)                                                                                                   CCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGAAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCT         >  1:3950082/1‑101 (MQ=1)                                                                                                    CGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTT        >  1:3636474/1‑101 (MQ=1)                                                                                                    CGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTT        >  1:1938930/1‑101 (MQ=1)                                                                                                                                                                                                                AGAGCGAAGCTTTGACGCGGGACCGGCGGCCGGATTTGTGGGAGAAGTTCGGCAAGTGATTTCGCCTCGGCTGCGCCGAGGCGACCC.GCCGGGGGCTCCGCCCCCG...................................................................................................  <  NC_014034/392553‑392448 ....................................................................................................GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTA  >  NC_014034/1732717‑1732815 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG