New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 530939129 (0.590)69 (0.320) 29/184 14.9 0.27 intergenic (+17/+124) valS/RCAP_rcc00497 valyl‑tRNA synthetase/UbiA prenyltransferase
?NC_014034 3609079 = 246 (1.040)intergenic (+18/‑153) clpB/dinB chaperone ClpB/DNA polymerase IV
Rejected: Position hash score below cutoff.

GATCGAGGAAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTC....................................  >  NC_014034/530832‑530939
....................................................................................................GGGGGCTCTG.CCCCCGCTTCGCTCCCCCCGGGATATTTGGGCA  >  NC_014034/3609079‑3609113
                                                                                                                                                
        AAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT                                     >  1:1289177/1‑101 (MQ=1)
        AAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT                                     <  1:770499/101‑1 (MQ=1)
         AGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG                                    <  1:958460/101‑1 (MQ=1)
         AGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG                                    <  1:941021/101‑1 (MQ=1)
          GCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.C                                  <  2:911775/101‑1 (MQ=1)
          GCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.C                                  <  2:3098411/101‑1 (MQ=1)
           CCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CC                                 >  1:1126181/1‑101 (MQ=1)
           CCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CC                                 <  1:3682047/101‑1 (MQ=1)
            CCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCC                                <  2:3665586/101‑1 (MQ=1)
             CGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCC                               >  2:4486048/1‑101 (MQ=1)
              GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCC                              >  2:361263/1‑101 (MQ=1)
              GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCC                              <  2:2056986/101‑1 (MQ=1)
              GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCC                              <  2:2026137/101‑1 (MQ=1)
              GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCC                              >  1:121742/1‑101 (MQ=1)
              GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCC                              <  1:65438/101‑1 (MQ=1)
               CGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCc                             <  2:679538/101‑2 (MQ=11)
                GAAATCCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCGGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcg                            <  2:3972827/101‑3 (MQ=9)
                GAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcg                            <  1:1114082/101‑3 (MQ=31)
                GAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcg                            <  2:1710596/101‑3 (MQ=31)
                GAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcg                            <  2:4614191/101‑3 (MQ=31)
                GAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcg                            >  1:2030203/1‑99 (MQ=31)
                  aagCCTGGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcgct                          <  1:773281/98‑5 (MQ=9)
                  AAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGGTCTG.CCCCCccct                          >  1:2215289/1‑97 (MQ=2)
                  AAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcgct                          >  2:2886462/1‑97 (MQ=14)
                  AAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcgct                          >  1:151788/1‑97 (MQ=14)
                   AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcgctt                         <  2:1908318/101‑6 (MQ=14)
                   AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTG.CCCCCcgctt                         <  1:2849476/101‑6 (MQ=14)
                    ACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTC                         >  2:2300731/1‑101 (MQ=14)
                    ACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTC                         <  1:1341789/101‑1 (MQ=14)
                     CCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCG                        <  2:3968216/101‑1 (MQ=11)
                     CCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCG                        <  1:1655832/101‑1 (MQ=11)
                       TCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCT                      >  1:4318509/1‑101 (MQ=2)
                        CGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTC                     >  2:3425127/1‑101 (MQ=9)
                         GCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCC                    >  1:2329453/1‑101 (MQ=12)
                           CGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCC                  <  2:3775034/101‑1 (MQ=19)
                             CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCC                >  1:1623295/1‑101 (MQ=255)
                             CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCC                <  2:2572562/101‑1 (MQ=255)
                             CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCC                <  1:1487025/101‑1 (MQ=255)
                             CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCC                <  2:4545025/101‑1 (MQ=255)
                             CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCC                <  2:4631601/101‑1 (MQ=255)
                              GCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCG               <  1:2031023/101‑1 (MQ=255)
                              GCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCG               <  1:3355025/101‑1 (MQ=255)
                                GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGG             <  1:809350/101‑1 (MQ=255)
                                GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGG             <  2:2443186/101‑1 (MQ=255)
                                 CGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGA            <  1:4472658/101‑1 (MQ=255)
                                  GCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGAT           <  1:2010805/101‑1 (MQ=255)
                                  GCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGAT           <  1:715493/101‑1 (MQ=255)
                                  GCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGAT           <  1:528381/101‑1 (MQ=255)
                                  GCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGAT           <  1:3102376/101‑1 (MQ=255)
                                   CGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATA          >  2:4174891/1‑101 (MQ=255)
                                   CGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATA          <  1:1034343/101‑1 (MQ=255)
                                   CGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATA          <  2:2332748/101‑1 (MQ=255)
                                   CGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATA          >  2:1484196/1‑101 (MQ=255)
                                    GGAATAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATAT         <  2:4028509/101‑1 (MQ=255)
                                    GGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATAT         >  1:2562764/1‑101 (MQ=255)
                                    GGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATAT         <  2:3097382/101‑1 (MQ=255)
                                    GGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGAGAT         >  2:1448510/1‑101 (MQ=255)
                                     GAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATT        <  2:1579956/101‑1 (MQ=255)
                                     GAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATT        >  1:2569929/1‑101 (MQ=255)
                                      AAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGTTCCCCCCGGGATATTT       >  2:1706926/1‑101 (MQ=255)
                                      AAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTT       <  2:2292714/101‑1 (MQ=255)
                                      AAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTT       <  1:4277162/101‑1 (MQ=255)
                                      AAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTT       >  2:4599091/1‑101 (MQ=255)
                                       AGAGGCCGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTt      <  1:779504/101‑2 (MQ=255)
                                        GAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTtc     <  2:2924684/101‑3 (MQ=255)
                                        GAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTtc     <  1:377724/101‑3 (MQ=255)
                                        GAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTtc     >  2:711687/1‑99 (MQ=255)
                                          GGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTtcgg   <  1:587235/101‑5 (MQ=255)
                                           GCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCTGCCCCCCGCTTCGCTCCCCCCGGGATATTTtcggc  <  1:3853696/101‑6 (MQ=255)
                                                                                                                                                
GATCGAGGAAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTC....................................  >  NC_014034/530832‑530939
....................................................................................................GGGGGCTCTG.CCCCCGCTTCGCTCCCCCCGGGATATTTGGGCA  >  NC_014034/3609079‑3609113

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 38 ≤  ATCG