New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 607937NA (NA)2 (0.010) 2/180 30.9 0.02 coding (148/1749 nt) nifA1 Nif‑specific regulatory protein
?NC_014034 2037906 = 210 (0.890)coding (111/228 nt) RCAP_rcc01885 hypothetical protein
Rejected: Position hash score below cutoff.

TGACATAGGGGTTCACCCCCGCGCCCTCGCCCGGCTCGGCCAGAAGCGCCAGCACCCCATGGCGCAGATCGAGGAAAGACGACAGCACGTTGAAGATCTGCGGCACCTCC..................................................................................................  >  NC_014034/607838‑607937
....................................................................................................CGGCACCTCCTCGCCCTCGATGCAGGAGGCCTTCATGACCGCCTGCCGCGCCTATATGGCCGCCGACCGCGGCCGCGACTTCTTCGAGACGCGGCTGAAGGCGCTCAA  >  NC_014034/2037906‑2038013
                                                                                                                                                                                                                
                                                            GGCGCAGATCGAGGAAAGACGACAGCACGTTGAAGATCTGCGGCACCTCCTCGCCCTCGATGCAGGAGGCCTTCATGACCGCCTGCCGCGCCTATATGGCC                                                 >  2:3205409/1‑101 (MQ=255)
                                                              CGCAGATCGAGGAAAGACGACAGCACGTTGAAGATCTGCGGCACCTCCTCGCCCTCGATGCAGGAGGCCTTCATGACCGCCTGCCGCGCCTATATGGCCGC                                               <  1:3205610/101‑1 (MQ=255)
                                                                                                                                                                                                                
TGACATAGGGGTTCACCCCCGCGCCCTCGCCCGGCTCGGCCAGAAGCGCCAGCACCCCATGGCGCAGATCGAGGAAAGACGACAGCACGTTGAAGATCTGCGGCACCTCC..................................................................................................  >  NC_014034/607838‑607937
....................................................................................................CGGCACCTCCTCGCCCTCGATGCAGGAGGCCTTCATGACCGCCTGCCGCGCCTATATGGCCGCCGACCGCGGCCGCGACTTCTTCGAGACGCGGCTGAAGGCGCTCAA  >  NC_014034/2037906‑2038013

Base quality scores:  ATCG  < 3 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 36 ≤  ATCG  < 41 ≤  ATCG