New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	681121 =	8 (0.040)	68 (0.350)	40/166	9.7	0.45	coding (2486/6438 nt)	RCAP_rcc00630	ice nucleation protein repeat family protein
	?	NC_014034	= 681528	158 (0.670)					coding (2079/6438 nt)	RCAP_rcc00630	ice nucleation protein repeat family protein
Rejected: Position hash score below cutoff.

CTGACCTCGGCGCAGATGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT....................................................................................................  <  NC_014034/681236‑681121 ...................................................................................................GGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGCGTCTGGGCTCGGCGCAGATCGGCGCGCTGACCAGCACGCAGATCGCGGCGCTCGAGGCGGCGGATCTGGCGCAG  <  NC_014034/681528‑681429                                                                                                                                                                                                                                            GCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGC                                                                                                   <  1:401914/101‑1 (MQ=1)                    CCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCG                                                                                                  <  2:4529699/101‑1 (MQ=1)                    CCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCG                                                                                                  >  2:4192949/1‑101 (MQ=1)                     CGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGC                                                                                                 >  2:2109044/1‑101 (MQ=1)                      GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                                <  2:901210/101‑1 (MQ=1)                      GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                                <  2:3545356/101‑1 (MQ=1)                      GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                                <  1:2656921/101‑1 (MQ=1)                      GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGGGGCGCT                                                                                                >  1:553224/1‑101 (MQ=1)                       CGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTG                                                                                               <  1:2666550/101‑1 (MQ=1)                        GCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGA                                                                                              <  2:4276972/101‑1 (MQ=1)                         CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                             <  2:2644186/101‑1 (MQ=1)                         CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                             >  1:418201/1‑101 (MQ=1)                         CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                             <  1:1060687/101‑1 (MQ=1)                          TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            >  2:3558699/1‑101 (MQ=1)                          TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            <  1:2825868/101‑1 (MQ=1)                          TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            <  2:1945420/101‑1 (MQ=1)                          TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            >  2:2400014/1‑101 (MQ=1)                          TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            >  2:2367524/1‑101 (MQ=1)                          TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGACCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            <  1:3563359/101‑1 (MQ=1)                           GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                           >  2:156003/1‑101 (MQ=1)                           GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                           >  1:3434051/1‑101 (MQ=1)                           GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                           >  2:253528/1‑101 (MQ=1)                            AGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGAC                                                                                          <  1:553973/101‑1 (MQ=1)                             GCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACG                                                                                         <  2:2242704/101‑1 (MQ=1)                             GCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACG                                                                                         <  1:3478769/101‑1 (MQ=1)                              CACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGG                                                                                        <  1:1070933/101‑1 (MQ=1)                              CACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGG                                                                                        <  2:1307949/101‑1 (MQ=1)                               ACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGC                                                                                       >  1:3182633/1‑101 (MQ=1)                                CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCG                                                                                      <  1:3932651/101‑1 (MQ=1)                                CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCG                                                                                      >  1:2246550/1‑101 (MQ=1)                                 GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGC                                                                                     <  2:1977956/101‑1 (MQ=1)                                 GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGC                                                                                     >  2:1954341/1‑101 (MQ=1)                                 GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGC                                                                                     >  1:802631/1‑101 (MQ=1)                                   CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAG                                                                                   <  1:2486485/101‑1 (MQ=1)                                   CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAG                                                                                   <  2:4641260/101‑1 (MQ=1)                                   CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAG                                                                                   <  1:2146744/101‑1 (MQ=1)                                    GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGG                                                                                  >  2:1296052/1‑101 (MQ=1)                                    GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGG                                                                                  <  2:2019617/101‑1 (MQ=1)                                     CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                                                                                 >  1:3145455/1‑101 (MQ=1)                                     CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                                                                                 >  1:440859/1‑101 (MQ=1)                                      AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCG                                                                                >  1:3227200/1‑101 (MQ=1)                                      AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCG                                                                                >  2:2532266/1‑101 (MQ=1)                                       GCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGG                                                                               <  1:2156272/101‑1 (MQ=11)                                       GCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGG                                                                               >  1:280914/1‑101 (MQ=11)                                        CTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGg                                                                              >  2:2336197/1‑100 (MQ=11)                                        CTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGg                                                                              >  2:4075412/1‑100 (MQ=11)                                          TGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGg                                                                            <  1:762990/101‑2 (MQ=17)                                          TGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGg                                                                            >  2:1514184/1‑100 (MQ=17)                                          TGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGg                                                                            >  2:2681360/1‑100 (MQ=17)                                           GCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgc                                                                           <  2:4623526/101‑3 (MQ=17)                                            CGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcg                                                                          <  2:3770619/101‑4 (MQ=17)                                             GGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgc                                                                         >  2:4460675/1‑97 (MQ=14)                                              GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgct                                                                        >  1:233119/1‑96 (MQ=11)                                              GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgct                                                                        <  1:3206900/101‑6 (MQ=11)                                               CGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgctg                                                                       <  2:3226999/101‑7 (MQ=0)                                               CGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgctg                                                                       <  2:1724228/101‑7 (MQ=0)                                                GCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgctgg                                                                      <  1:2400149/101‑8 (MQ=0)                                                  TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGC                                                                    >  2:3688257/1‑101 (MQ=0)                                                  TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGC                                                                    >  2:3698308/1‑101 (MQ=0)                                                  TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGC                                                                    <  2:2877081/101‑1 (MQ=0)                                                  TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGC                                                                    >  2:2588336/1‑101 (MQ=0)                                                  TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGC                                                                    <  1:1861340/101‑1 (MQ=0)                                                   GAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCT                                                                   >  1:2794926/1‑101 (MQ=2)                                                    AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTC                                                                  <  1:2141165/101‑1 (MQ=255)                                                    AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTC                                                                  >  2:4192332/1‑101 (MQ=9)                                                     ATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTCG                                                                 >  1:1357085/1‑101 (MQ=255)                                                      TACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTCGa                                                                >  1:3294252/1‑100 (MQ=255)                                                       ACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTCGac                                                               >  1:3041161/1‑99 (MQ=255)                                                                                                                                                                                                                          CTGACCTCGGCGCAGATGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT....................................................................................................  <  NC_014034/681236‑681121 ...................................................................................................GGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGCGTCTGGGCTCGGCGCAGATCGGCGCGCTGACCAGCACGCAGATCGCGGCGCTCGAGGCGGCGGATCTGGCGCAG  <  NC_014034/681528‑681429 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG