New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	744650 =	90 (0.440)	16 (0.080)	11/162	21.6	0.17	intergenic (+35/+177)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	2330309 =	65 (0.270)					intergenic (+284/+28)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

AAGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGG.....................................................................................................  <  NC_014034/744748‑744650 ....................................................................................................CGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGTCGA  >  NC_014034/2330309‑2330408                                                                                                    |                                                                                                     AAGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGAGGTCCGGGGGCGGAGCCCCCGGCGGGTC                                                                                                     >  2:4256513/1‑101 (MQ=17)    CAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGCGCC                                                                                                  >  2:2889619/1‑101 (MQ=17)                                                    accgggggCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAG                                                  <  2:4450498/93‑1 (MQ=19)                                                          ggCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCC                                            <  2:3021403/99‑1 (MQ=14)                                                             CAAAGACCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAA                                         <  1:4262192/101‑1 (MQ=0)                                                              AAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAG                                        <  1:1548351/101‑1 (MQ=1)                                                                agATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGT                                      <  2:540983/99‑1 (MQ=1)                                                                 gATCCGGGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTC                                     <  1:1953525/100‑1 (MQ=0)                                                                        GGGGTCCGGGGGCGGACCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCT                              <  2:590176/101‑1 (MQ=1)                                                                         ggccgCGGGGGGGGCGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTT                             <  2:854576/96‑1 (MQ=0)                                                                         GGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTT                             <  2:3196672/101‑1 (MQ=1)                                                                          GGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTC                            <  2:2244012/101‑1 (MQ=1)                                                                               GGGGGTGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGAT                       <  1:2170131/101‑1 (MQ=1)                                                                                GGGGCGGCCCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATC                      <  1:1948011/101‑1 (MQ=0)                                                                                   GCGGACCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACC                   <  2:309089/101‑1 (MQ=1)                                                                                    gggccCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCC                  <  1:3525539/96‑1 (MQ=1)                                                                                    CGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCC                  <  2:785142/101‑1 (MQ=1)                                                                                        GCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTG              <  2:493720/101‑1 (MQ=1)                                                                                          CCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTT            <  1:3674270/101‑1 (MQ=1)                                                                                            ggGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCC          <  1:2596410/99‑1 (MQ=1)                                                                                              GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCC        <  2:2846704/101‑1 (MQ=1)                                                                                              GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCC        <  1:1677424/101‑1 (MQ=1)                                                                                                CGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGG      >  1:2924377/1‑101 (MQ=1)                                                                                                CGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGG      >  2:3052595/1‑101 (MQ=1)                                                                                                CGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGG      >  1:2074870/1‑101 (MQ=1)                                                                                                 GGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGT     >  2:3790418/1‑101 (MQ=1)                                                                                                 GGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGT     >  2:762311/1‑101 (MQ=1)                                                                                                 GGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGT     <  2:784317/101‑1 (MQ=1)                                                                                                  GGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGTC    >  1:299550/1‑101 (MQ=1)                                                                                                   GTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGTCG   <  2:3568546/101‑1 (MQ=1)                                                                                                    TCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGTCGA  >  1:1064128/1‑101 (MQ=1)                                                                                                    |                                                                                                     AAGCAGGGGTGGGACAGGCTGTACCGCCGCAGACGGAAAGTCATTCATTTCATCTTGCCCCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGG.....................................................................................................  <  NC_014034/744748‑744650 ....................................................................................................CGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGTCGA  >  NC_014034/2330309‑2330408 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 28 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG