New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 834099	234 (1.070)	2 (0.010)	2/184	31.3	0.01	intergenic (‑765/‑301)	mcpA1/hoxH	methyl‑accepting chemotaxis protein McpA/NAD‑reducing hydrogenase HoxS subunit beta
	?	NC_014034	= 2004185	225 (0.950)					coding (1036/1116 nt)	RCAP_rcc01851	AraC family transcriptional regulator
Rejected: Position hash score below cutoff.

CTTACCTGCGCGCGCGACCGGGGCGGGGCTGTCGCCGCCCCGGAAACCCTTTGGAAAGCACGTTGAAAAGCTTTCGGACGCAGCGGGCAATTCGTTTGACCCGCCCG....................................................................................................  >  NC_014034/833993‑834099 ...................................................................................................CCCGCCCGAGGTGCCGCGTTCGCGATAGGGCGTGGTCTGGTAATGCGCGCGGTAGCATTTCGAGAAATGCGAGGGCGAGGCGAAGCCGCAGGCCAAGGCCACGTTGAT  <  NC_014034/2004185‑2004086                                                                                                                                                                                                                                                                                             GACGCAGCGGGCAATTCGTTTGACCCGCCCGAGGTGCCGCGTTCGCGATAGGGCGTGGTCTGGTAATGCGCGCGGTAGCATTTCGAGAAATGCGAGGGCGA                                >  1:4525549/1‑101 (MQ=255)                                                                              ACGCAGCGGGCAATTCGTTTGACCCGCCCGAGGTGCCGCGTTCGCGATAGGGCGTGGTCTGGTAATGCGCGCGGTAGCATTTCGAGAAATGCGAGGGCGAG                               <  2:4525296/101‑1 (MQ=255)                                                                                                                                                                                                                 CTTACCTGCGCGCGCGACCGGGGCGGGGCTGTCGCCGCCCCGGAAACCCTTTGGAAAGCACGTTGAAAAGCTTTCGGACGCAGCGGGCAATTCGTTTGACCCGCCCG....................................................................................................  >  NC_014034/833993‑834099 ...................................................................................................CCCGCCCGAGGTGCCGCGTTCGCGATAGGGCGTGGTCTGGTAATGCGCGCGGTAGCATTTCGAGAAATGCGAGGGCGAGGCGAAGCCGCAGGCCAAGGCCACGTTGAT  <  NC_014034/2004185‑2004086 Base quality scores:  ATCG  < 3 ≤  ATCG  < 30 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG