New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 974307	4 (0.020)	12 (0.060)	3/170	28.9	0.26	intergenic (+187/+72)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
	?	NC_014034	= 3329507	66 (0.280)					intergenic (‑42/+27)	argF/argD	ornithine carbamoyltransferase/acetylornithine aminotransferase
Rejected: Position hash score below cutoff.

TCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG...................................................................................................  >  NC_014034/974199‑974307 ...............................................................................................ACAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCCGCTCGGCAAGGAAACCGACATGACCCATTTTCTTGACATCCACACCACCAGCCCGGCCGATCTGCGCTCGATGATC  <  NC_014034/3329507‑3329409                                                                                                                                                                                                                              ACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCCGGGGg                                                                                                   >  1:152228/1‑100 (MQ=0)                 CCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGG                                                                                              <  1:1834986/101‑1 (MQ=0)                   AGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGG                                                                                            >  2:4244008/1‑101 (MQ=0)                       TATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGA                                                                                        <  1:4597939/101‑1 (MQ=0)                        ATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAG                                                                                       >  2:2471778/1‑101 (MQ=0)                         TTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGC                                                                                      <  1:1386052/101‑1 (MQ=0)                         TTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGC                                                                                      <  1:733692/101‑1 (MQ=0)                           TGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCC                                                                                    <  1:4389848/101‑1 (MQ=0)                           TGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCC                                                                                    >  1:4571739/1‑101 (MQ=0)                                CAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGC                                                                               >  1:3483255/1‑101 (MQ=0)                                 AAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCg                                                                              >  1:4357998/1‑100 (MQ=0)                                  AGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCgg                                                                             >  1:2075266/1‑99 (MQ=0)                                                                                                                                                                                                                   TCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG...................................................................................................  >  NC_014034/974199‑974307 ...............................................................................................ACAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCCGCTCGGCAAGGAAACCGACATGACCCATTTTCTTGACATCCACACCACCAGCCCGGCCGATCTGCGCTCGATGATC  <  NC_014034/3329507‑3329409 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG