New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1396166 =147 (0.930)20 (0.130) 2/134 26.5 0.12 coding (48/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 = 1434909 146 (0.620)intergenic (‑688/‑270) RCAP_rcc01334/RCAP_rcc01335 hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

Only 100 of 223 total aligned reads displayed.

GCGCATCTGATGTATATGCCCGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC  >  NC_014034/1396066‑1396266
                                                                                                      |                                                                                                     
 cgcATCTGATGTATATGCCCGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCg                                                                                                      <  2:3638317/101‑1 (MQ=255)
  gcATCTGATGTATATGCCCGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGGCACGCCGCgg                                                                                                     >  2:1977547/1‑100 (MQ=255)
   cATCTGATGTATATGCCCGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTc                                                                                                    >  1:3367254/1‑101 (MQ=255)
    aTCTGATGTATATGCCCGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTcc                                                                                                   >  1:537422/1‑100 (MQ=255)
    aTCTGATGTATATGCCCGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCg                                                                                                   <  2:3875101/101‑1 (MQ=255)
      cTGATTTATATGCCCGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCt                                                                                                 <  1:1797331/101‑1 (MQ=255)
      cTGATGTATATGCCCGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCCGCGTCGCt                                                                                                 >  1:2969149/1‑101 (MQ=255)
         aTGTATATGCCCGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTccc                                                                                              >  1:652836/1‑101 (MQ=255)
           gTATATGCCCGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGCCGCTccccc                                                                                            >  2:3862852/1‑101 (MQ=255)
            tataTGCCCGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTcccccc                                                                                           >  1:91800/1‑101 (MQ=255)
             atatGCCCGGTGAGACGGCTGGCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTccccccc                                                                                          >  1:2694517/1‑100 (MQ=255)
                  cccGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCgggg                                                                                     <  2:4516460/101‑1 (MQ=255)
                   ccGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCggggg                                                                                    >  2:858225/1‑101 (MQ=255)
                    cGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGc                                                                                   <  1:3389957/101‑1 (MQ=255)
                       tgtctgcgcggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTG.CGCGCTG.GTCGCTCCCCCCGCGGGGGCGTg                                                                                <  1:3573061/91‑1 (MQ=9)
                       tGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTg                                                                                <  2:4230507/101‑1 (MQ=255)
                       tGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTg                                                                                >  2:1567974/1‑101 (MQ=255)
                        gtctgcgcggTCGCTCCCCCCGCGGGGGCGTGGATCGAACCTCGGCCTCGATCCGGTCAGCCTCGTATTG.CGCGCTG.GTCGCTCCCCCCGCGGGGGCGTgg                                                                               <  2:4033645/92‑1 (MQ=2)
                        gtctgcgcggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTG.CGCGCTG.GTCGCTCCCCCCGCGGGGGCGTgg                                                                               <  1:983142/92‑1 (MQ=2)
                        gtctgcgcggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTG.CGCGCTG.GTCGCTCCCCCCGCGGGGGCGTgg                                                                               <  1:1179849/92‑1 (MQ=2)
                        gtctgcgcggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTG.CGCGCTG.GTCGCTCCCCCCGCGGGGGCGTgg                                                                               <  2:1355497/92‑1 (MQ=2)
                        gagaCGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTgg                                                                               <  2:3020961/101‑1 (MQ=255)
                         aagcGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTTGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGa                                                                              >  2:747629/4‑101 (MQ=255)
                             ggCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTGGCTCCCCCCGCGGGGGCGTggggcga                                                                          >  1:1709948/1‑96 (MQ=255)
                             ggCTGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                                          <  2:2588664/101‑1 (MQ=255)
                              gCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                                                         <  1:1540868/101‑1 (MQ=255)
                                tGTTGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAAc                                                                       >  1:3129290/1‑101 (MQ=255)
                                tGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGGCTTCCTCCCCCCGCGGGGGGGTGGGTCGAAAc                                                                       >  2:2275799/1‑101 (MQ=37)
                                 gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcc                                                                      >  2:4125533/1‑101 (MQ=255)
                                 gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcc                                                                      <  1:111875/101‑1 (MQ=255)
                                 gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCCCGGGGGCGTGGATCGAAAcc                                                                      >  1:4404526/1‑101 (MQ=255)
                                 gTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcc                                                                      <  1:1073624/101‑1 (MQ=255)
                                  tCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAccc                                                                     >  1:4708612/1‑101 (MQ=255)
                                   cGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCg                                                                    <  2:39242/101‑1 (MQ=255)
                                    gCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgg                                                                   >  1:3168384/1‑101 (MQ=255)
                                    gCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgg                                                                   <  2:2968961/101‑1 (MQ=255)
                                    gCTCCCCCCGCGGGGGCGTGGATCGAAACTGTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgg                                                                   >  1:4222408/1‑101 (MQ=255)
                                      tCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCg                                                                 <  1:40321/101‑1 (MQ=255)
                                      cccccccGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCg                                                                 <  2:865109/100‑1 (MQ=255)
                                       ccccccGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGa                                                                <  2:2735335/101‑1 (MQ=255)
                                       ccccccGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGa                                                                >  1:2438056/1‑101 (MQ=255)
                                       ccccccGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGa                                                                >  2:2126557/1‑101 (MQ=255)
                                         ccccGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGaaa                                                              <  2:2636561/101‑1 (MQ=255)
                                          cccGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGaaaa                                                             >  2:1841850/1‑101 (MQ=255)
                                          cccGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGaaaa                                                             >  1:767829/1‑101 (MQ=255)
                                          cccGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGaaaa                                                             <  2:1500718/101‑1 (MQ=255)
                                            cgcgGGGGCGTGGATCGAAACTTTTCGTC.TTCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAAc                                                           <  1:344609/101‑1 (MQ=255)
                                             gcgGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACg                                                          >  2:2181651/1‑101 (MQ=255)
                                             gcgGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACg                                                          >  2:335969/1‑101 (MQ=255)
                                               gggggCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGc                                                        >  2:2880998/1‑101 (MQ=255)
                                               gggggCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACCCGGCGAAAAACGGc                                                        >  2:1952544/1‑101 (MQ=255)
                                                ggggCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGcc                                                       >  2:3254545/1‑101 (MQ=255)
                                                  ggCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCAt                                                     <  1:272742/101‑1 (MQ=255)
                                                   gCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATg                                                    <  1:1068722/101‑1 (MQ=255)
                                                     gTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAAAGGCCATGc.c                                                 >  1:2943322/1‑101 (MQ=255)
                                                      tGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGACGCCAAGTTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGc.cc                                                >  1:1640593/1‑100 (MQ=255)
                                                       ngNNCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTc                                               <  1:2957933/100‑1 (MQ=255)
                                                        gATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTcc                                              <  1:661565/101‑1 (MQ=255)
                                                         aTCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCg                                             <  2:2437921/101‑1 (MQ=255)
                                                          tCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCgg                                            <  1:2655209/101‑1 (MQ=255)
                                                           cGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCggg                                           >  1:1948010/1‑101 (MQ=255)
                                                            gAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCCCTCCCCCCCCGGGGGCGTGGATCGAAAACCCGCGGAAAACGGGCCTGC.CTCCGGgt                                          >  2:3422451/1‑101 (MQ=37)
                                                                 ttttCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTg                                     <  2:3305144/101‑1 (MQ=255)
                                                                  tttCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTgg                                    <  1:4506121/101‑1 (MQ=255)
                                                                   ttCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGc                                   >  1:4253012/1‑101 (MQ=255)
                                                                   ttCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGc                                   >  2:3365259/1‑101 (MQ=255)
                                                                     cGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTg                                 <  2:4470711/101‑1 (MQ=255)
                                                                       tC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTc                               <  2:1775601/101‑1 (MQ=255)
                                                                       tC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTc                               >  2:476572/1‑101 (MQ=255)
                                                                       tC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTc                               <  1:3328938/101‑1 (MQ=255)
                                                                        c.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCg                              <  1:1980889/101‑1 (MQ=255)
                                                                        c.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCg                              >  1:2788853/1‑101 (MQ=255)
                                                                          aTCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAACCGGCGAAAAACGGCCATGC.CTCCGGGGGTCTGGCTGTCGc                             >  1:1873551/1‑101 (MQ=255)
                                                                            cTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGcaggtgcag                           <  2:1607770/101‑9 (MQ=255)
                                                                            cTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTc                           <  2:4057628/101‑1 (MQ=255)
                                                                             tGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTTTGGCTGtgcgtcc                          >  2:3819811/1‑95 (MQ=255)
                                                                             tGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTcc                          <  2:4356208/101‑1 (MQ=255)
                                                                             tGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTcc                          <  1:4125778/101‑1 (MQ=255)
                                                                             tGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTcc                          >  1:4354907/1‑101 (MQ=255)
                                                                              gg.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTccc                         >  2:3798697/1‑101 (MQ=255)
                                                                               g.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGGGTCTGGCTGTCGCTcccc                        >  2:1289198/1‑101 (MQ=255)
                                                                                 cAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGAGAAACGGGAATGC.CGCCGGGCGGGGGGGTGCCGCTccccc                       >  2:3577167/1‑101 (MQ=21)
                                                                                  aGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTcccccc                      <  1:2203485/101‑1 (MQ=255)
                                                                                  aGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CACCGGGTGTCTGGCTGTAGATaccccc                      >  2:4697823/1‑101 (MQ=37)
                                                                                        gcgcCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCgggg                >  1:3145696/1‑101 (MQ=255)
                                                                                        gcgcCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCgggg                <  1:1354275/101‑1 (MQ=255)
                                                                                            cgccACGCTGCGTCGCTCCCCCCGCGTGGGCGTGGATCGAAACCCCGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGt            <  1:3988566/101‑1 (MQ=255)
                                                                                             gccACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGTg           <  1:4649866/101‑1 (MQ=255)
                                                                                             gccACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGTg           >  2:2229989/1‑101 (MQ=255)
                                                                                              ccACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGGGTCTGGCTTTCGCTCCCCCCGCGGGGGCGTgg          >  1:4733554/1‑101 (MQ=255)
                                                                                              ccACGCTGCGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGTgg          <  2:1068899/101‑1 (MQ=255)
                                                                                                aCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGTGGAt        >  2:2022241/1‑101 (MQ=255)
                                                                                                 cGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGTGGATc       <  2:2943146/101‑1 (MQ=255)
                                                                                                 cGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGTGGATc       >  1:381424/1‑101 (MQ=255)
                                                                                                  gCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCg      <  2:727513/101‑1 (MQ=255)
                                                                                                  gCTACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGCGGCGTGGATCg      <  2:3168184/101‑1 (MQ=255)
                                                                                                  ccatcGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTGGTCGAAGACCTGCTTGGCGCGCTGGATCTGCGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCg      <  1:3300448/97‑1 (MQ=2)
                                                                                                    tGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGaa    <  1:4447691/101‑1 (MQ=255)
                                                                                                      cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc  <  1:2126678/101‑1 (MQ=255)
                                                                                                      cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc  >  2:2061326/1‑101 (MQ=255)
                                                                                                      |                                                                                                     
GCGCATCTGATGTATATGCCCGGTGAGACGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTC.ATCTGG.CAGGCTCGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGGCCATGC.CTCCGGGTGTCTGGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC  >  NC_014034/1396066‑1396266

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG