New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 392469	45 (0.190)	15 (0.060)	2/198	32.4	0.21	intergenic (‑117/+26)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	2330309 =	68 (0.290)					intergenic (+284/+28)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TCACCGCGCAAGACTATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTC  >  NC_014034/392369‑392569                                                                                                        |                                                                                                      tCACCGCGCAAGACTATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCggg                                                                                                       >  2:1260483/1‑101 (MQ=255) tCACCGCGCAAGACTATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCggg                                                                                                       >  1:4280120/1‑101 (MQ=255)   aCCGCGCAAGACTATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGGGCCCCC.GGCggggg                                                                                                     >  1:2069655/1‑99 (MQ=255)    ccGCGCAAGACTATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCgggggg                                                                                                    >  1:3542365/1‑98 (MQ=255)    ccGCGCAAGACTATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCAGTTCATCTTGCTAAAAAGATACCGTTGGGCC.GGAGGCGGTGCCCGC.GGCGGGGCg                                                                                                    >  2:1103533/1‑101 (MQ=255)        gaaaGACTATG.GGCCCAAAGCGGGGGGGAAAAGGGCGGCCCTTTTCATCTTCCCTCAAATACCCGGGGGGTCG.GGGGGGGGACCCCCC.GGCGGGTCGCCTc                                                                                                <  2:4690913/99‑1 (MQ=9)         cAAGACTATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCgggggggcccg                                                                                               >  1:4531580/1‑93 (MQ=255)         cAAGACTATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCggggggcggcg                                                                                               >  2:2493430/1‑93 (MQ=255)          aaGACTATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCgggggggccccc                                                                                              >  2:10617/1‑92 (MQ=255)          aaGACTATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCggggggcgtccg                                                                                              >  2:2287003/1‑92 (MQ=255)              cTATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGCGCCTCGGGGCa                                                                                          >  1:3913598/1‑101 (MQ=255)               tATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGCGCCGCCgcgggg                                                                                         >  1:1450434/1‑98 (MQ=21)                aTGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGCGGCCCGgcggcgc                                                                                        >  2:1353985/1‑97 (MQ=21)                    ggCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGCGCCCCCgcggccgccgc                                                                                    >  1:1411890/1‑93 (MQ=18)                       ccAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGCGGCCCGgcgccggccgcgcg                                                                                 >  2:2236432/1‑91 (MQ=21)                                 ggggACAAGGGCAGCCCTTTCCATCTTCCCAAAAATACCCGGGGGGCCG.GGGGGCGGCCCCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACtt                                                                       <  2:4576693/100‑1 (MQ=16)                                            ggggctttttCTTCTT.CCCCAAATACCGCGGGGGTGC.GGGGGGGGAGCCCCCGGGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTtct                                                            <  2:2106137/94‑1 (MQ=21)                                              ggCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGGGCCCCGGGGCGGCCCGGGG.GAAAAAACATTCCGCACATCTcc                                                          >  2:1053359/1‑101 (MQ=9)                                                      cATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGGGGCTCCGCGCGGCCGGGGC.GGAAAAACTTGCCGGACCTTTccccccaaca                                                  >  1:1344456/1‑94 (MQ=9)                                                      cATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGCGCCCCCGCGCCGCCCGGGG.GGAAACACCTGCCGGACCTCCccccccaacc                                                  >  2:1626533/1‑94 (MQ=2)                                                       ctttttccTCAAAATCCCCGGGGGGCCGGGGGGGGGCCCCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATc                                                  <  1:2148297/95‑1 (MQ=21)                                                        tCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGGGCCCCCGCGCGGGCGGGGG.GGAAACAATTTCCGAACCTCTCCcacccaaccc                                                >  2:2159204/1‑94 (MQ=9)                                                         cTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGGGGCTCGGCGCCGCCGGGGG.GGAAACACCTTCCGCACATCTcccccccaccccc                                               >  2:4209365/1‑91 (MQ=9)                                                         cTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGGGGCCCCGCGCCGCCGCGGC.GGAAACACATTCCCCACTTCTcccccccaacccc                                               >  1:78433/1‑91 (MQ=9)                                                                 aaactcccggggggTCC.GGGGGCGCGCCCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGt                                       <  2:583615/92‑1 (MQ=25)                                                                  aaTATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGCGCCCCGGCGCCGCCCAGGC.GGAAACACTTGCCCGACCTCTCCCCCCAAACCCgccccccgcc                                      >  2:3598708/1‑97 (MQ=9)                                                                   atatCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGGGGCGCGGGGCAGCCGGGGC.GGAAACAATTTTCGCACTTCTCCCACAAACACCGCCCCCGGCcc                                     >  2:2825615/1‑101 (MQ=9)                                                                     cccccGGGGGGCGGGGGGGCGCACCCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTccc                                    <  2:3886075/99‑1 (MQ=25)                                                                       cccGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGCGCCCCCGCGCCGGCGCGGC.GGAAACACCTTCCGAACATCTCCCCCCAAACCCCCCGCCCGGcccccc                                 >  1:383938/1‑98 (MQ=9)                                                                        ccGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGCGCCCCGGCGCCGCCGAGGG.GGAAACACCTGCCGCACTTCTCCCCCAAATCCGGCCCCCGGGCCcgcgc                                >  2:2597637/1‑100 (MQ=21)                                                                         gggggggggggggggCGGCCCCCCG.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGt                                <  1:4452704/91‑1 (MQ=37)                                                                         cGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGGCGCCCCGGCGCCGCCACGGC.GCGAACACCTGTCGCACCTCTCCCCCAAAACCACCGCCCCGTCCcgccgc                               >  2:2345944/1‑98 (MQ=2)                                                                          gggggTCC.GGGGGCGGAGCCCCC.GGCGGGGCGCCTCCGCGCCGCCGGCGC.GGAAACACCTTCCGACCTTTTCCCCCCAAACCCCCCGCCCGGCCCGCGCCa                              >  2:2807399/1‑101 (MQ=9)                                                                                 c.GGGGGCGGCGCCCCG.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTc                       <  2:1540049/101‑1 (MQ=255)                                                                                  ggggggCGCCCCCCCG.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTc                       <  1:1260573/100‑1 (MQ=38)                                                                                       ggggcccccgc.GGCGGGTCGCCCCGGCGCAGCCGAGGC.AAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGctct                  <  2:2069534/95‑1 (MQ=38)                                                                                       gcggccccccc.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGctct                  <  2:1577747/95‑1 (MQ=255)                                                                                        gggccccccg.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTg                 <  1:2221145/96‑1 (MQ=255)                                                                                        ggccccccgc.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTg                 <  2:1330814/96‑1 (MQ=255)                                                                                        gcccgCCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTg                 <  1:4586940/97‑1 (MQ=255)                                                                                        cggccccccc.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTg                 <  2:824219/96‑1 (MQ=255)                                                                                         ggAGCCCCC.GGCGGGGCGCCCCGGCGCCGCCCCGGCGGAAAAAACTT.CCCAACTTCTCCCCCAAAACCCGCCGCCCGGCCCCGGGCAAAGCTTCGctcttc                >  2:3032077/1‑99 (MQ=255)                                                                                         gcgccccct.GGCGGGTCCCCTCGGCGCAGCCGCGGT.TAAGTCACTTGCCGACCTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTgc                <  1:3098497/97‑1 (MQ=255)                                                                                            ctcggggggcggGTCGCCTCGGCGCATCCGAGGC.GAAAACACTTGCCGACCTCCACCTACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTgcgc              <  1:1103619/94‑1 (MQ=37)                                                                                            cccccc.GCCGGGTGCCCTCGTCGCAGCCAAGGC.GAAATCACTTGCCGACCTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCt             <  2:1540946/100‑1 (MQ=255)                                                                                                 ggggcggGCCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTcgcc         <  1:1978205/99‑1 (MQ=255)                                                                                                  gggcggGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTcgccg        <  1:1922938/100‑1 (MQ=255)                                                                                                   ggcggGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTcgccgc       <  2:3592328/101‑1 (MQ=255)                                                                                                    gcggGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCgccgcc      <  1:2493574/101‑1 (MQ=255)                                                                                                       ggTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAtt   <  2:4162100/101‑1 (MQ=255)                                                                                                       ggTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAtt   >  2:4297797/1‑101 (MQ=255)                                                                                                        gTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTc  >  2:4077798/1‑101 (MQ=255)                                                                                                        gTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTc  >  2:824908/1‑101 (MQ=255)                                                                                                        gTCGCCCCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTc  <  1:2978465/101‑1 (MQ=255)                                                                                                        |                                                                                                      TCACCGCGCAAGACTATGCGGCCCAAA.CCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGC.GAAATCACTTGCCGAACTTCTCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTC  >  NC_014034/392369‑392569 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG