New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2747878 =	16 (0.070)	14 (0.060)	6/192	27.9	0.13	intergenic (‑210/+83)	RCAP_rcc02553/RCAP_rcc02554	hypothetical protein/NmrA family protein
	?	NC_014034	2945110 =	178 (0.750)					intergenic (+87/+357)	RCAP_rcc02755/RCAP_rcc02756	metallo‑beta‑lactamase/hypothetical protein
Rejected: Position hash score below cutoff.

CAGCCCGCACCACAGAGGGCAGCGCCCGG.CCC.GCGGCCGAGAAGCGCCCGCC.GGCCGGCTGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCC  >  NC_014034/2747818‑2747977                                                                |                                                                                                    cAGCCCGCACCACAGAGGGCAGCGCCCGG.CCCGGCGGGCGAGAAGCCCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGCGGTCACAGGAc                                                               >  1:2035637/1‑101 (MQ=17)                 gggCACCGCCCGG.CCCGGCGGGCGAGACGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGc                                               <  2:359905/101‑1 (MQ=17)                   gcggcccccggcccc.GCGGCCGAGACGCCGCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCa                                             <  2:503121/95‑1 (MQ=18)                          ccgg.cccgGCGGGGGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGAt                                      <  2:2035516/101‑1 (MQ=18)                           cgg.cccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATg                                     >  1:2063779/1‑101 (MQ=18)                           cgg.cccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATg                                     >  2:3401351/1‑101 (MQ=18)                            gg.cccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATgg                                    >  2:975865/1‑101 (MQ=18)                               cccggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGcc                                  >  1:1009587/5‑101 (MQ=18)                                ccggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCt                                 >  2:3416581/4‑101 (MQ=21)                                ccggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAACACGATGGCCt                                 >  2:1058617/4‑101 (MQ=21)                                 cggcgGGCGAGAAGCGCCCACCGGGCCCGGAGCTACCCGAGGGCCTTTGGGCCCGCGGGGGCCACAGGACCTCGGTGACGCATGGCCAAGGCGATGGCCtt                                >  2:3020093/3‑101 (MQ=21)                                     gggcGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGcc                            >  1:2686359/4‑101 (MQ=21)                                        cGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAg                         >  1:4282448/1‑101 (MQ=21)                                        cGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAg                         >  1:1438350/1‑101 (MQ=21)                                         gagaAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAgg                        >  1:2949674/1‑101 (MQ=21)                                          agaAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGt                       >  2:2454760/1‑101 (MQ=21)                                                 cccgccgGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCa                >  1:1425880/1‑101 (MQ=21)                                                  ccgccgGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCAt               >  2:909916/1‑101 (MQ=21)                                                     ccgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGcc            >  1:4564666/4‑101 (MQ=255)                                                      cgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCa           >  1:427054/3‑101 (MQ=255)                                                        ggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAgc         >  1:2822466/1‑101 (MQ=255)                                                        ggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAgc         >  2:1616485/1‑101 (MQ=255)                                                        ggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAgc         >  2:734163/1‑101 (MQ=255)                                                         gccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAgcg        >  1:3570294/1‑101 (MQ=255)                                                           cgggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgcc      >  2:3804491/6‑101 (MQ=255)                                                           cgggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgcc      >  2:844284/6‑101 (MQ=255)                                                           cgggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGCCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgcc      >  2:434736/6‑101 (MQ=255)                                                            gggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgccg     <  2:1438256/97‑1 (MQ=255)                                                              gcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCTAGGCGATGGCCTTGGCCCAGGTCGGCTCATGCCAGCgccgcc   >  2:4110666/3‑101 (MQ=255)                                                               cgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGccgccc  >  2:1591557/2‑101 (MQ=255)                                                                |                                                                                                    CAGCCCGCACCACAGAGGGCAGCGCCCGG.CCC.GCGGCCGAGAAGCGCCCGCC.GGCCGGCTGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCC  >  NC_014034/2747818‑2747977 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG