New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 974307	4 (0.020)	20 (0.090)	16/188	21.0	0.33	intergenic (+187/+72)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
	?	NC_014034	3276370 =	79 (0.330)					intergenic (‑122/+127)	RCAP_rcc03082/RCAP_rcc03083	lipoprotein/membrane bound YbgT‑like protein
Rejected: Position hash score below cutoff.

GGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGG.GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGT  >  NC_014034/974208‑974376                                                                                                       |                                                                         ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAATATCCC.ggg.g                                                                          >  1:2187485/1‑101 (MQ=255) ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGGTTTCACCTTGGGAAAAATATACC.ggg.g                                                                          >  1:72345/1‑101 (MQ=38)   aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.cgg.ggg                                                                        >  1:152228/1‑99 (MQ=255)       cccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAAAATCCC.ggg.gggccgg                                                                    >  2:958585/1‑95 (MQ=38)        ccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.ggg.ggtccggg                                                                   <  1:1834986/101‑8 (MQ=39)          aGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTANCTTGCGACAAAAATCAC.ggg.gggcccgggg                                                                 >  1:925668/1‑92 (MQ=255)          aGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.ggg.ggtccggggg                                                                 >  2:4244008/1‑92 (MQ=38)                                       ggcgggATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGTGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGAc                                     <  2:2987509/101‑1 (MQ=14)                                        gcgggATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATAGCCCGGGG.GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACa                                    <  2:2114038/101‑1 (MQ=9)                                                                        tGTTTTCACCTTGCGACAAATATCCCGGGG.GTCCGGGGGCGGAGCCCCCGGCGGGGCGCCCCGGCGGCCGCCGCGGCGGAAGACCCCGCCCGCCACGGCCg    >  1:2726051/1‑101 (MQ=2)                                                                          ttttCACCTTGCGACAAATATCCCGGGG.GTCCGGGGGCGGAGCCCCCGGCGGGGGGGCTCCGCGCCAGCCGAGGCGAAAAAACCCCACCGCCACCGGCggg  >  2:4487285/1‑100 (MQ=9)                                                                                                       |                                                                         GGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGG.GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGT  >  NC_014034/974208‑974376 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG