New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396166 =	147 (0.930)	20 (0.130)	2/134	26.5	0.21	coding (48/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1434711	NA (NA)					intergenic (‑490/‑468)	RCAP_rcc01334/RCAP_rcc01335	hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

GCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCCCGCGGCG.TTTGACCTGGTCGCGG..GCAGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA  >  NC_014034/1434677‑1434776                                   |                                                                     gcggTCGCCCCCCCCGCGGGGGCGTGGATCGAAACCCCCGGCGCCGCAGCGAGTGCGTCTGGA..ACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa  <  1:2067057/98‑1 (MQ=2) atcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCT.GGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaa   <  2:544427/98‑1 (MQ=2)                                   |                                                                     GCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCCCGCGGCG.TTTGACCTGGTCGCGG..GCAGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA  >  NC_014034/1434677‑1434776 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG