New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1396198135 (0.880)49 (0.320) 13/130 17.0 0.28 coding (80/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1434813 = 115 (0.480)intergenic (‑592/‑366) RCAP_rcc01334/RCAP_rcc01335 hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

Only 100 of 123 total aligned reads displayed.

GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGTG  >  NC_014034/1434746‑1434913
                                                                   |                                                                                                      
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt                                                                       <  1:118265/101‑1 (MQ=11)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt                                                                       <  2:2638545/101‑1 (MQ=11)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt                                                                       >  2:2018035/1‑101 (MQ=11)
 tCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATg                                                                      <  2:1099484/101‑1 (MQ=31)
 gcGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATg                                                                      <  2:2299371/100‑1 (MQ=14)
  cGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATgg                                                                     <  1:4311606/101‑1 (MQ=32)
  cGCCCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATgg                                                                     <  1:1616413/101‑1 (MQ=17)
   gCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGa                                                                    <  2:169032/101‑1 (MQ=32)
    cTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGaa                                                                   <  1:1070880/101‑1 (MQ=33)
    cTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGaa                                                                   <  1:4603255/101‑1 (MQ=33)
     tCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGaaa                                                                  >  1:304571/1‑101 (MQ=34)
     tCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGaaa                                                                  >  1:936069/1‑101 (MQ=34)
     tCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGaaa                                                                  <  2:4489851/101‑1 (MQ=34)
     tCCCCCCGCGGGGGCGCGGATCGAAAAGACGCGACGAACGAGGGAGATCTCGGTGGCGCCTTGTCCCTACCCCCGCGGGGGCGTGGATCGAAACATCGaaa                                                                  >  2:1313805/1‑101 (MQ=11)
      ccccccGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGaaaa                                                                 >  2:363250/1‑101 (MQ=35)
       cccccGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAAc                                                                >  2:2548002/1‑101 (MQ=37)
        ccccGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGGGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAAcc                                                               >  2:1044092/1‑101 (MQ=38)
         cccGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACcg                                                              <  1:3938594/101‑1 (MQ=39)
          ccGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACcgc                                                             >  1:2648202/1‑101 (MQ=40)
           cgcgGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACcgc.g                                                           <  2:1110936/101‑1 (MQ=40)
            gcgGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.gg                                                          <  1:2064747/101‑1 (MQ=255)
             cgGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTAGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGc                                                         >  2:3007389/1‑101 (MQ=255)
               ggggCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCt.t                                                      >  2:2524043/1‑101 (MQ=255)
                gggCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.Tc                                                     <  1:4321607/101‑1 (MQ=255)
                 ggCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGGAAACCGC.GGAt.taa                                                    >  2:264733/1‑99 (MQ=255)
                 ggCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCa                                                    <  1:3315058/101‑1 (MQ=255)
                  gCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCAc                                                   <  1:4668938/101‑1 (MQ=255)
                   cGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTTGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCAcc                                                  >  2:2924214/1‑101 (MQ=255)
                   cGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCAcc                                                  <  1:4307825/101‑1 (MQ=255)
                   cGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCAcc                                                  >  2:3770538/1‑101 (MQ=255)
                     tGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACcgc                                                >  1:2418884/1‑101 (MQ=255)
                     tGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACcgc                                                <  1:787909/101‑1 (MQ=255)
                     tGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAAACGC.GGCT.TCACcgc                                                >  2:1689694/1‑101 (MQ=255)
                      ggATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACcgcg                                               <  1:3616059/101‑1 (MQ=255)
                         tCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCgg                                            >  2:2741644/1‑101 (MQ=255)
                          cGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCggg                                           >  2:654096/1‑101 (MQ=255)
                          cGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCggg                                           >  1:4204913/1‑101 (MQ=255)
                           gAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGa                                          >  1:2979390/1‑101 (MQ=255)
                            aaaCGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGAt                                         >  2:3232801/1‑101 (MQ=255)
                            aaaCGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGAt                                         >  1:1894307/1‑101 (MQ=255)
                            aaaCGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGAt                                         >  1:1491610/1‑101 (MQ=255)
                               cgacgCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTgg                                      <  2:851557/101‑1 (MQ=255)
                                gacgCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTggg                                     >  2:1250741/1‑101 (MQ=255)
                                  cgcgCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTc                                   <  1:4553192/101‑1 (MQ=255)
                                  cgcgCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTc                                   >  2:3848049/1‑101 (MQ=255)
                                      cTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTc                               >  2:2506161/1‑101 (MQ=255)
                                       tGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGTGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTcc                              <  1:3991292/101‑1 (MQ=255)
                                       tGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTcc                              >  2:2424018/1‑101 (MQ=255)
                                       tGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTcc                              >  2:4041322/1‑101 (MQ=255)
                                        gAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTccc                             >  2:3050979/1‑101 (MQ=255)
                                        gAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTccc                             >  1:1547626/1‑101 (MQ=255)
                                         aaGGAGGGTGCTCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTcccc                            <  1:1313897/101‑1 (MQ=255)
                                         aaGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTcccc                            <  1:1689799/101‑1 (MQ=255)
                                         aaGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTcccc                            >  1:2361069/1‑101 (MQ=255)
                                         aaGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTcccc                            <  1:2605052/101‑1 (MQ=255)
                                          aggaggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTccccc                           >  2:926360/1‑101 (MQ=255)
                                           ggaggGTGATCTCGGTGGCTCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTcccccc                          <  1:4438816/101‑1 (MQ=255)
                                           ggaggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTcccccc                          >  2:3115777/1‑101 (MQ=255)
                                           ggaggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTcccccc                          >  1:3862649/1‑101 (MQ=255)
                                           ggaggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTcccccc                          >  2:4539738/1‑101 (MQ=255)
                                           ggaggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTcccccc                          >  1:3274897/1‑101 (MQ=255)
                                            gaggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCcg                         <  2:2755139/101‑1 (MQ=255)
                                             aggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCcgc                        >  1:144664/1‑101 (MQ=255)
                                             aggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCcgc                        <  1:2089268/101‑1 (MQ=255)
                                             aggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCcgc                        >  2:3755543/1‑101 (MQ=255)
                                              gggTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGTCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCcgcg                       <  2:3933074/101‑1 (MQ=255)
                                                 tGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCgggg                    <  2:3579993/101‑1 (MQ=255)
                                                 tGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCgggg                    <  1:598832/101‑1 (MQ=255)
                                                  gATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCggggg                   >  1:3382298/1‑101 (MQ=255)
                                                  gATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCggggg                   >  1:523018/1‑101 (MQ=255)
                                                  gATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCggggg                   <  1:389694/101‑1 (MQ=255)
                                                   aTCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGc                  <  2:4651159/101‑1 (MQ=255)
                                                     ctcGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCgg                >  1:4701682/1‑100 (MQ=255)
                                                      tcGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTg               <  1:2396846/101‑1 (MQ=255)
                                                      tcGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTg               <  2:1473416/101‑1 (MQ=255)
                                                       cGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTgg              <  1:4300540/101‑1 (MQ=255)
                                                        ggTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGa             >  1:3876778/1‑101 (MQ=255)
                                                        ggTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGa             <  1:2018152/101‑1 (MQ=255)
                                                        ggTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGa             >  2:2136025/1‑101 (MQ=255)
                                                        ggTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCAACGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGa             >  2:4508421/1‑101 (MQ=255)
                                                         gTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGAt            <  1:1955443/101‑1 (MQ=255)
                                                          tGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATc           >  2:3700501/1‑101 (MQ=255)
                                                          tGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATc           <  1:3626925/101‑1 (MQ=255)
                                                          tGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATc           >  2:2903522/1‑101 (MQ=255)
                                                          gggCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATc           <  2:1623384/100‑1 (MQ=255)
                                                          cacatcgccgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGTAGATCTCGGGCTGGCTGCGCTCGCGGTTGCGTCGCCCCCCCCGCGGGGGCGTGGa             <  2:2443120/92‑1 (MQ=2)
                                                           ggCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCg          >  2:185984/1‑101 (MQ=255)
                                                            gcgcCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGa         <  1:1044171/101‑1 (MQ=255)
                                                              gcCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa       >  1:3938389/1‑101 (MQ=255)
                                                                cTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcc     >  2:144288/1‑101 (MQ=255)
                                                                cTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcc     >  1:1320012/1‑101 (MQ=255)
                                                                cTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGGCGAGCGAAAcc     >  2:3995416/1‑101 (MQ=255)
                                                                 ttGTCGCTCCCCCCGCGGGGGCGTGTATCCAAACATGGACAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCg    <  2:884247/101‑1 (MQ=255)
                                                                 ttGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCg    >  2:2569988/1‑101 (MQ=255)
                                                                 ttGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCg    >  2:2857521/1‑101 (MQ=255)
                                                                  tGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCgg   >  2:1648721/1‑100 (MQ=255)
                                                                  tGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGt   >  1:4402508/1‑101 (MQ=255)
                                                                  tGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGt   >  2:224963/1‑101 (MQ=255)
                                                                  tGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCGCCCCCCGCGGGGGCGGGGATCGAAACCgc   >  1:3146726/1‑100 (MQ=255)
                                                                   gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGTg  >  1:2664514/1‑101 (MQ=255)
                                                                   |                                                                                                      
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGC.GGCT.TCACCGCGCGGGATTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGTG  >  NC_014034/1434746‑1434913

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG