New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 3214783	NA (NA)	105 (0.540)	67/164	3.7	0.99	intergenic (‑39/+19)	dctQ3/dctP3	TRAP C4‑dicarboxylate transport system permease subunit DctQ/TRAP C4‑dicarboxylate transport system permease subunit DctP
	?	NC_014034	3214784 =	2 (0.010)					intergenic (‑40/+18)	dctQ3/dctP3	TRAP C4‑dicarboxylate transport system permease subunit DctQ/TRAP C4‑dicarboxylate transport system permease subunit DctP
Rejected: Position hash score below cutoff.

TCGCCGTCGCGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAGA  >  NC_014034/3214684‑3214883                                                                                                               |                                                                                                    tcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........c                                                                                                     <  1:1267536/101‑1 (MQ=255) tcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........c                                                                                                     >  2:360225/1‑101 (MQ=255)  cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                                                    <  1:2821050/101‑1 (MQ=255)  cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                                                    >  2:4067324/1‑101 (MQ=255)  cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                                                    <  1:1899762/101‑1 (MQ=255)   gccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cgg                                                                                                   >  1:237104/1‑101 (MQ=255)   gccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cgg                                                                                                   >  2:3902869/1‑101 (MQ=255)    ccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cggc                                                                                                  <  2:3544129/101‑1 (MQ=255)     cgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGg..........cggcg                                                                                                 <  2:846820/101‑1 (MQ=255)      gtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGgcgc                                                                                                >  2:474897/1‑101 (MQ=255)      gtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGgcgc                                                                                                >  2:4328857/1‑101 (MQ=255)        cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccg                                                                                              >  1:4248004/1‑101 (MQ=255)        cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccg                                                                                              >  2:3267638/1‑101 (MQ=255)        cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccg                                                                                              >  1:1706609/1‑101 (MQ=255)        cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccg                                                                                              >  1:1313705/1‑101 (MQ=255)         gcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccgt                                                                                             >  2:1086489/1‑100 (MQ=255)         gcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccgt                                                                                             <  2:880021/101‑2 (MQ=255)         gcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccgt                                                                                             <  1:1141211/101‑2 (MQ=255)          cgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGgcgcggtc                                                                                            >  1:354450/1‑97 (MQ=255)          cgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccgtc                                                                                            <  2:557970/101‑3 (MQ=255)          cgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccgtc                                                                                            >  2:4669558/1‑99 (MQ=255)          cgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccgtc                                                                                            >  2:4142716/1‑99 (MQ=255)          cgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGGCCGGGCAGGAAAGGGGAAGCG..........AGGggccgtc                                                                                            >  2:478090/1‑99 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtcc                                                                                           <  2:3523678/101‑1 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtcc                                                                                           >  2:2757907/1‑101 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtcc                                                                                           <  2:1689519/101‑1 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccggcc                                                                                           >  1:3560610/1‑101 (MQ=255)            aTGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccg                                                                                          <  2:4192446/101‑1 (MQ=255)            aTGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccg                                                                                          >  1:4326256/1‑101 (MQ=255)              gAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggc                                                                                        >  2:112249/1‑99 (MQ=255)               aGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcggcgtcgggcg                                                                                       >  2:3068701/1‑94 (MQ=255)               aGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcg                                                                                       <  2:3074043/101‑4 (MQ=255)               aGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGCAAAGGG..........CGGCGccgtccggcg                                                                                       <  1:2699258/101‑4 (MQ=255)                 cgcgGCAATCAGCCCCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgcc                                                                                     <  2:4233905/101‑6 (MQ=255)                 cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........GGGCGccgcccggcgcc                                                                                     >  1:4427935/1‑96 (MQ=255)                 cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgcc                                                                                     <  2:4393859/101‑6 (MQ=255)                  gcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGGCCCCGCTTAGGTCGCGGAAGGAAAGGGAAAGGG..........CGGcgccgggccgcgcgc                                                                                    >  1:3536767/1‑91 (MQ=255)                  gcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccg                                                                                    >  1:3731763/1‑95 (MQ=255)                  gcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccg                                                                                    <  2:1837790/101‑7 (MQ=255)                   cgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgc                                                                                   >  2:3964594/1‑94 (MQ=255)                   cgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgc                                                                                   >  2:1000759/1‑94 (MQ=255)                    ggCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgcc                                                                                  <  1:4673542/101‑9 (MQ=255)                     gCAATCAGCCCCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgccc                                                                                 <  2:4017018/101‑10 (MQ=255)                     gCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgccc                                                                                 >  2:553047/1‑92 (MQ=255)                      cAATCATCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgcccg                                                                                <  2:1266437/101‑11 (MQ=255)                      cAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcggcgcccg                                                                                >  2:1958241/1‑91 (MQ=255)                      cAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgcccg                                                                                >  1:3619274/1‑91 (MQ=255)                                                   aTGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGa                                                             >  1:2359155/1‑101 (MQ=255)                                                     gcgcAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcg                                                           >  2:684649/1‑101 (MQ=255)                                                      cgcAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcgg                                                          >  1:560672/1‑101 (MQ=255)                                                       gcagcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcggc                                                         >  1:1585834/1‑101 (MQ=255)                                                        cagcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcggcg                                                        >  1:2147837/1‑101 (MQ=255)                                                            aTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGgcggcgg                                                    >  2:3560308/1‑100 (MQ=255)                                                            aTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGa                                                    >  1:518777/1‑101 (MQ=255)                                                            aTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGGCTTATTCCGCCGTCGCGGCCTTGACGGCGGGGa                                                    >  1:4107382/1‑101 (MQ=255)                                                             tGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGag                                                   >  2:3270460/1‑100 (MQ=255)                                                                cggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGt                                                >  1:3076961/1‑101 (MQ=255)                                                                 ggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATgggt                                               >  1:1938684/1‑99 (MQ=255)                                                                 ggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATgggt                                               >  2:869079/1‑99 (MQ=255)                                                                  gcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTGGCGGCCTTGACGGAGGCGCTGGttt                                              >  2:3992148/1‑101 (MQ=255)                                                                   cccccGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGGCTTATTCCGCCGGCGCGGCCTTGACGGCGGCGATGGCTTc                                             >  2:610585/1‑101 (MQ=255)                                                                     cccGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCgg                                           >  1:4457745/1‑101 (MQ=255)                                                                     cccGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCgg                                           >  1:3573924/1‑101 (MQ=255)                                                                     cccGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCgg                                           >  1:1262857/1‑101 (MQ=255)                                                                                                 cggg..........CGCCCCCCCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTc     <  2:1175255/100‑1 (MQ=255)                                                                                                 cccg..........cggcgCCCCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTc     <  1:4329104/98‑1 (MQ=255)                                                                                                      ggcgccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCg          >  1:3014815/10‑101 (MQ=255)                                                                                                      ggcgccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCg          >  1:631192/10‑101 (MQ=255)                                                                                                      ggcgccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCg          >  2:3863084/10‑101 (MQ=255)                                                                                                       ccccccgccggccCCCCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCgg         <  1:4366684/93‑1 (MQ=255)                                                                                                         gccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCgggg       >  1:1757178/7‑101 (MQ=255)                                                                                                         ccccgccggccCCCCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCgggg       <  1:1179703/95‑1 (MQ=255)                                                                                                          ccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGt      >  1:4126675/6‑101 (MQ=255)                                                                                                           cgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTc     >  2:1661872/5‑101 (MQ=255)                                                                                                              ccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAGa  >  2:3207887/2‑101 (MQ=255)                                                                                                              ccggccCCCCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAGa  <  1:2063547/100‑1 (MQ=255)                                                                                                               |                                                                                                    TCGCCGTCGCGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAGA  >  NC_014034/3214684‑3214883 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG