New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	788008 =	125 (0.560)	59 (0.260)	29/188	15.2	0.49	intergenic (+80/+56)	pntB/RCAP_rcc00717	pyridine nucleotide transhydrogenase subunit beta/hypothetical protein
	?	NC_014034	= 3701428	NA (NA)					intergenic (+5/+44)	grpE/mutS	GrpE protein/DNA mismatch repair protein MutS
Rejected: Position hash score below cutoff.

GGTGACATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGG.......G.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTAAAG  >  NC_014034/3701328‑3701504                                                                                                     |                                                                                           ggTGACATCATTGAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcag                                                                                            >  1:2566335/1‑101 (MQ=255) ggTGACATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGTCGTGAGTTCGATGCCGAAAGCCTGaggcag                                                                                            <  1:4227051/101‑1 (MQ=255) ggTGACATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcag                                                                                            <  2:3036955/101‑1 (MQ=255)  gTGACATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcagg                                                                                           >  1:2074299/1‑101 (MQ=255)  gTGACATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcagg                                                                                           >  1:4091984/1‑101 (MQ=255)   tGACATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcaggg                                                                                          >  2:2173870/1‑100 (MQ=255)   tGACATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcaggg                                                                                          >  2:2397842/1‑100 (MQ=255)    gACATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcagggg                                                                                         >  2:379667/1‑99 (MQ=255)    gACATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcagggg                                                                                         >  1:496890/1‑99 (MQ=255)    gACATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGcc                                                                                         <  2:1575652/101‑1 (MQ=255)    gACATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGcc                                                                                         <  2:3179486/101‑1 (MQ=255)     aCATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCg                                                                                        <  2:343347/101‑1 (MQ=255)     aCATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCg                                                                                        <  2:3383217/101‑1 (MQ=255)      catcatTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcagggggg                                                                                       >  1:2267633/1‑97 (MQ=255)      catcatTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg                                                                                       <  2:1200766/101‑1 (MQ=255)      catcatTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg                                                                                       <  1:859169/101‑1 (MQ=255)       atcatTCAGGTGATGGACGACGGCTTCCTGGGGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcagggggcg                                                                                      >  1:4227407/1‑96 (MQ=255)       atcatTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcaggggggg                                                                                      >  2:2757119/1‑96 (MQ=255)          atTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcagggggggggg                                                                                   >  1:4429885/1‑93 (MQ=255)          atTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcagggggggggg                                                                                   >  2:4609191/1‑93 (MQ=255)          atTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggc                                                                            <  1:1077816/101‑4 (MQ=255)           ttCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcaggggggggggg                                                                                  >  1:4630088/1‑92 (MQ=255)           ttCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcaggggggggggg                                                                                  >  2:1170659/1‑92 (MQ=255)           ttCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGaggcaggggggggggg                                                                                  >  2:2945920/1‑92 (MQ=255)            tCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggctt                                                                          <  2:2516687/101‑6 (MQ=255)             cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc                                                                         <  2:1453788/101‑7 (MQ=255)             cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc                                                                         <  2:1025309/101‑7 (MQ=255)                gTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttcgcc                                                                      <  1:3297190/101‑10 (MQ=255)                 tGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttcgccc                                                                     <  2:1234503/101‑11 (MQ=255)                 tGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttcgccc                                                                     <  1:180029/101‑11 (MQ=255)                                     ctgcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATAtttt                                                 <  2:3130132/101‑1 (MQ=21)                                     ctgcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATAtttt                                                 <  1:2576188/101‑1 (MQ=21)                                      tgcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTc                                                <  2:3662048/101‑1 (MQ=21)                                       gcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCa                                               <  1:48815/101‑1 (MQ=21)                                          cGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCa                                            <  2:2074178/101‑1 (MQ=21)                                          cGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCa                                            <  1:3000666/101‑1 (MQ=21)                                           gACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCaa                                           <  2:1159207/101‑1 (MQ=21)                                            aCCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAg                                          <  2:2103242/101‑1 (MQ=21)                                             ccGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGa                                         <  1:4428370/101‑1 (MQ=21)                                              cGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGAt                                        <  1:1203388/101‑1 (MQ=21)                                              cGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGAt                                        <  1:4609444/101‑1 (MQ=21)                                                 ctgctgCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATaaa                                     <  1:16531/101‑1 (MQ=21)                                                 ctgctgCGTCCCGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATaaa                                     <  1:1930486/101‑1 (MQ=21)                                                    ctgcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGAt                                  <  2:976552/101‑1 (MQ=21)                                                    ctgcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGAt                                  <  2:3819192/101‑1 (MQ=21)                                                      gcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCa                                <  2:3945348/101‑1 (MQ=21)                                                      gcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCa                                <  1:4662126/101‑1 (MQ=21)                                                       cGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAg                               <  2:4429635/101‑1 (MQ=21)                                                       cGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAg                               <  2:2201751/101‑1 (MQ=21)                                                        gTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGt                              <  2:4457076/101‑1 (MQ=21)                                                        gTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGt                              <  2:1099706/101‑1 (MQ=21)                                                             gCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTc                         <  1:752606/101‑1 (MQ=21)                                                             gCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTc                         <  1:2311689/101‑1 (MQ=21)                                                             gCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGG.......GGGCTTCTCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTc                         <  2:774777/101‑1 (MQ=25)                                                              ggAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCa                        <  2:1683700/100‑1 (MQ=21)                                                               gAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAg                       <  2:3282769/101‑1 (MQ=21)                                                                aaaGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGa                      <  1:1111416/101‑1 (MQ=21)                                                                aaaGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGa                      <  2:2295580/101‑1 (MQ=21)                                                                    tCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAggg                  <  1:2461314/101‑1 (MQ=21)                                                                      ggCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGgcg                <  2:4361228/101‑1 (MQ=21)                                                                      ggCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGgcg                <  2:4657781/101‑1 (MQ=21)                                                                        cGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGgcgcg              <  1:1318645/101‑1 (MQ=21)                                                                                cGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGt      <  2:4629835/101‑1 (MQ=21)                                                                                 gATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTa     <  2:1434016/101‑1 (MQ=21)                                                                                 gATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTa     <  2:477106/101‑1 (MQ=21)                                                                                  aTGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTaa    <  1:489742/101‑1 (MQ=21)                                                                                  aTGCCGAAAGCCTGAGGCAGGCCGGGGCCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTaa    <  1:3934272/101‑1 (MQ=21)                                                                                    gCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTAAAg  <  2:4247543/101‑1 (MQ=21)                                                                                                     |                                                                                           GGTGACATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGG.......G.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTAAAG  >  NC_014034/3701328‑3701504 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG