New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 974307	4 (0.020)	13 (0.060)	3/172	29.1	0.38	intergenic (+187/+72)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
	?	NC_014034	2880557 =	39 (0.160)					coding (1028/1053 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
Rejected: Position hash score below cutoff.

GCTCATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........C..CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGC  >  NC_014034/2880459‑2880635                                                                                                   |                                                                                                      gCTCATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTc                                                                                                     >  1:1579125/1‑101 (MQ=255) gCTCATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTc                                                                                                     <  1:1383178/101‑1 (MQ=255)  cTCATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTcc                                                                                                    <  1:3074676/101‑1 (MQ=255)  cTCATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTcc                                                                                                    >  1:2985919/1‑101 (MQ=255)  cTCATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTcc                                                                                                    <  1:1616165/101‑1 (MQ=255)   tCATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCg                                                                                                   <  2:4179446/101‑1 (MQ=255)   tCATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCg                                                                                                   >  1:2723247/1‑101 (MQ=255)   tCATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCg                                                                                                   >  1:1365536/1‑101 (MQ=255)   tCATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCg                                                                                                   >  2:938081/1‑101 (MQ=255)    cATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCgg                                                                                                  >  2:1708741/1‑101 (MQ=255)    cATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCgg                                                                                                  >  2:322759/1‑101 (MQ=255)    cATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCgg                                                                                                  >  1:2886672/1‑101 (MQ=255)     aTGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCggg                                                                                                 >  2:524909/1‑101 (MQ=255)      tGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCgggg                                                                                                >  1:1389738/1‑101 (MQ=255)      tGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCgggg                                                                                                >  1:2638153/1‑101 (MQ=255)        ggTCGCGATCCCCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGc                                                                                              <  1:4386880/101‑1 (MQ=255)        ggTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGc                                                                                              >  2:4692875/1‑101 (MQ=255)        ggTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGc                                                                                              <  1:2757937/101‑1 (MQ=255)         gTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCa                                                                                             <  1:1335965/101‑1 (MQ=255)          tCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCag                                                                                            <  1:3226396/101‑1 (MQ=255)           cgcgATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCaga                                                                                           <  2:1273942/101‑1 (MQ=255)           cgcgATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCaga                                                                                           <  1:3862981/101‑1 (MQ=255)              gATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGcc                                                                                        <  1:4154320/101‑1 (MQ=255)              gATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTCCTTCAAATATCCCGGGGGTCCGGGGGCAGAGcc                                                                                        >  1:4111195/1‑101 (MQ=255)                 cACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGTGccacc                                                                                     >  2:3490517/1‑101 (MQ=255)                    cTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCcggc                                                                                  >  1:3866013/1‑101 (MQ=255)                    cTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCcggc                                                                                  >  1:2985687/1‑101 (MQ=255)                      cgcgCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCcggcg..........g                                                                      >  2:2955871/1‑101 (MQ=255)                         gcAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCggcg..........gcgc                                                                   >  2:4128286/1‑99 (MQ=255)                           aaGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCcggcg..........gagggc                                                                 >  1:55374/1‑96 (MQ=255)                           aaGGGCGGCAGCACGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCggcg..........gcggct                                                                 >  1:2573453/1‑97 (MQ=255)                            aGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCTTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCcggcg..........gggggtc                                                                >  1:1096838/1‑95 (MQ=255)                              ggcggcAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cgtcac                                                   >  1:2053843/1‑97 (MQ=255)                              ggcggcAGCCCGTCAACCGCACCCAAAGCCCGCCCCCTTCCTTTTCATCTTTCTTCAAATATCCGGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cgtcac                                                   <  2:2985499/101‑5 (MQ=25)                               gcggcAGCCCTTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATACCCGGGGGGTCCGGGGGCAGACCCCCCGGCG..........GC.........g..cgtcaca                                                  <  2:4514289/101‑6 (MQ=25)                               ctggcCGCCCCTCACCCGCAGCGAAGGCCCGCCCCCTACCTTTTCATCTTGCTTCAAATTTCCGGGGGGTCCGGGGGGAGAACCCCCGGCG..........GC.........g..cgtcaca                                                  <  2:3098333/99‑6 (MQ=255)                                cggcAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCCCCG..........GC.........g..cgtcacag                                                 >  2:4207800/1‑95 (MQ=25)                                  gcAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cgtcacagcc                                               >  1:1997346/1‑93 (MQ=255)                                   cAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cgtcacagccg                                              >  1:4159063/1‑92 (MQ=25)                                                                       ttttCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCcgc                   >  2:4501785/1‑101 (MQ=2)                                                                        tttCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCcgcg                  >  1:1037891/1‑101 (MQ=2)                                                                        tttCATCTTGCTTCAAATATCCCGGGGGCCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCcgcg                  >  2:527606/1‑101 (MQ=2)                                                                          tCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGAt                >  2:123905/1‑101 (MQ=9)                                                                          tCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGAt                >  2:3495523/1‑101 (MQ=9)                                                                             tCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAg             >  1:4722093/1‑101 (MQ=9)                                                                               ttGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGGGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCCCCGCCATCGTCAAGGCCGCGATCCGAc           >  2:2821630/1‑101 (MQ=9)                                                                               ttGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCCTCTTCGCCGCCCTCGTCAAGGCCGCGATCAGAc           >  1:2382809/1‑101 (MQ=9)                                                                                tGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACt          >  2:4634201/1‑101 (MQ=9)                                                                                tGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACt          >  2:3135307/1‑101 (MQ=9)                                                                                  cTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACtgt        >  1:547718/1‑101 (MQ=12)                                                                                  cTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGCCAAGGCCGCGATCAGACtga        >  1:1236281/1‑100 (MQ=9)                                                                                   ttCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGatcaga       >  2:2840661/1‑96 (MQ=9)                                                                                    tCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGc      >  1:3379932/1‑101 (MQ=12)                                                                                    tCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCACCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGc      >  2:4729504/1‑101 (MQ=9)                                                                                      aaaTATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCgg    >  2:3956869/1‑101 (MQ=12)                                                                                      aaaTATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCgg    >  2:2475196/1‑101 (MQ=12)                                                                                      aaaTATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGGCACAGC.........CG.CGC..CGCCCCCCTCTTCGCCGCCATCGTCAAGGCCGCCATCAAACTGTGCgg    >  2:3251469/1‑101 (MQ=2)                                                                                      aaaTATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GCGCGGCACAGC..CGCGGCGGCCCCATCTTCGCCGCCCTCGTCAAGGCCGCGCTCAGACTGCGCgg    >  2:129286/1‑101 (MQ=2)                                                                                       aaTATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCggg   >  1:3887630/1‑101 (MQ=12)                                                                                       aaTATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCggg   >  2:1398853/1‑101 (MQ=12)                                                                                        atatCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GCGCGTCACAGCCGCGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGc  >  1:1326942/1‑101 (MQ=12)                                                                                                   |                                                                                                      GCTCATGGGTCGCGATCACCTCGCGCAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........C..CGC..CGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGC  >  NC_014034/2880459‑2880635 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG