| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,995,625 | C→G | 14.3% | intergenic (+165/+55) | RCAP_rcc02802 → / ← RCAP_rcc02803 | membrane dipeptidase/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,995,625 | 0 | C→G | 14.3% | 2.9 ‑3.8 0.0 | 39 | intergenic (+165/+55) | RCAP_rcc02802/RCAP_rcc02803 | membrane dipeptidase/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/6): ref base (18/15): total (18/21) | ||||||||||
| Fisher's exact test strand distribution p-value = 2.23e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
AGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGC > NC_014034/2995525‑2995725
|
aggggCTTATTTGGCCAAGGAAACCCCCTTCGGTTG.CCGCCCCGCACCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGc < 2:1711956/98‑1 (MQ=37)
agagGCGTTTTTTGCCAAGAAAACCCCCTTGGGTTC.CCGCCCCGCACCCCGTCGGCGCCCCAGCGCCCTGCTTTTCCTTGG.AAAAAT.ACG.CCGGGGGGTGc < 2:3587280/101‑1 (MQ=25)
agagGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGc < 2:4729626/101‑1 (MQ=255)
gagGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCg < 2:2875893/101‑1 (MQ=255)
agGCGTATTTTGCCAAGGAAACCCCCTTCGGCTG.CCGCCCCGCAGCCCGTCGGCGGCCCGGCGCCCTGCTTTTCCTTCG.CAAACT.ACG.CCGGGGGGTGCgg < 2:4735559/101‑1 (MQ=37)
ggCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCgg..g < 2:702095/101‑1 (MQ=255)
ttgtttGCCAAGGAAAACCCCCTCGGGTGCCCCCCCCGCACCCGGCGGGCGGCCCAGCCCCTTGTTTTTCCTTGG.AAAAAT.ACG.CCGGGGGGTGCgg..gggg < 2:3437670/98‑1 (MQ=16)
aTTTTGCCAAGGAAACCCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCg < 2:749327/101‑1 (MQ=255)
aTTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCg > 2:19752/1‑101 (MQ=255)
tttGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.a < 1:3844525/101‑1 (MQ=255)
tttGCCAAGAAACCCCCCTTCGTTTC.CCCCCCCGCACCCCGTCGGCGGCCCAGCCCCTTGTTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.a < 2:3212058/101‑1 (MQ=18)
ttGCCAAGGAAACCCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.Ag < 2:4203650/101‑1 (MQ=255)
tGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGc > 2:362088/1‑101 (MQ=255)
gCCAAGGAAACCCCCTTCGGTTG.CCGCCCCGCAGCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGcc < 1:362122/101‑1 (MQ=255)
gCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGcc < 2:3173967/101‑1 (MQ=255)
caaagaaaccccccTTCGGTCC.CCCCCCCGCCCCCCGGGGGC.CCCCCCCCCCCTTTTTTTTCTTGGAAAAAAG.CCC.CCGGGGGGTGCGG..GGGGCGG.AGccc < 1:1623871/91‑1 (MQ=2)
aaGGAAACCCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGccccc < 2:1944041/101‑1 (MQ=255)
ggAACACCCCTTCGGTTC.CCGCCCCGCACCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCcg < 1:4384569/101‑1 (MQ=255)
gaaaCCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CACAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCcc.cg > 1:2061467/2‑101 (MQ=255)
ccccTTCGTTTC.CCGCCCCGCACCCCGTGGGCGGCCCGGCGCCCTGTTTTTCTTGGG.AAAATT.ACG.CGGGGGGGTGCGG..GGGGGGG.GGCCCCCCG.CGGGTc < 2:1544220/101‑1 (MQ=16)
cccTGCGGGTG.CGGCCCCGAAGCCCGTGGGGGGCCCCGCCCCTTGCTTTGCCTGGC.CAAAAG.GGG.GGGGGGGGGGGGG..GGGGCGG.AGCCCCCCG.CGGGTCg < 2:1929713/101‑1 (MQ=9)
ttCGGTTG.CCCCCGCGCACCCCGTCGGCGGCCCAGCGCCCTGCTTTCCCTTGG.CAAAAT.AGG.CCGGGGGGTCCGG..GGGGCGG.AGCCCCCCG.CGGGTCGccc < 2:3893328/101‑1 (MQ=18)
ccccccccCCACCCCGTGGGCGCCCCAGCCCCCTTTTTTCCCGGGG.CAAAAT.CCG.CGGGGGGGTGGGG..GGGGGGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..g < 1:1419898/97‑1 (MQ=12)
ccGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGGCGCCCCGGCTT..GCCGGGGCGGAATc > 2:4057193/1‑101 (MQ=255)
ccGCCGGCGCCCCAGCCCCCTGCTTTTCCTGGG.AAAAAT.GGG.CGGGGGGGTGGGG..GGGGGGG.ACCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATc < 1:4601521/101‑1 (MQ=18)
gccgcggcCCCGGCCCCTTTTTTTCCTTGG.GAAAATCGCG.CGGGGGGGGGGGG..GGGGGGG.CCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATccc < 2:2570271/98‑1 (MQ=16)
ggcCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAAGCCCCCGCTc > 1:686689/1‑101 (MQ=255)
cccccTGCTTTTCCTTGG.CAAAAT.CCG.CGGGGGGGTGGGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCa < 2:2924081/99‑1 (MQ=255)
cTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAgaga > 1:632652/1‑101 (MQ=255)
tGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCTCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCagaggc > 2:3927275/1‑99 (MQ=255)
tttttCCTTGG.AAAAAT.ACGCCCGGGGGGTGCGG..GGGGCGG.AGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcatc > 2:2611488/2‑95 (MQ=0)
ttCCTTGG.AAAAAT.ACGCCCGGGGGGTGCGG..GGGGCGG.AGCCCCCCGCCGGGTCGCCTCGGCGTCCGCCGAGGCGAAATACCCC.CTCAGCccttcatcttg > 1:789505/1‑92 (MQ=0)
ttCCTTGG.AAAAAT.ACGCCCGGGGGGTGCGG..GGGGCGG.AGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcatcttg > 2:4078231/1‑92 (MQ=0)
gg.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGAccccc > 1:1263423/1‑98 (MQ=255)
aaaT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAAcc > 1:1094053/1‑101 (MQ=255)
aaaT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAAGCCACCCCTCCGTCCCAGAGCCTTTCGACCTCGAAcc > 1:4107436/1‑101 (MQ=25)
aCG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCCGAGACTTTCGACCTCGAACCGGGt > 2:675890/1‑101 (MQ=255)
cG.CCGGGGGGTGGGG..GGGGCGG.CGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTc < 1:3787334/101‑1 (MQ=255)
cgctgcggggTGCGGGCGGGGCGGTCGCCCCCCGCCGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCg < 1:19759/95‑1 (MQ=255)
ggggggGGGGG..GGGGGGC.CCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAc < 1:1652402/101‑1 (MQ=38)
ggggggCGGGG..GGGGGGC.CCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAc < 1:3013837/101‑1 (MQ=38)
gggTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCCGAcgcg > 2:4639260/1‑101 (MQ=255)
gggTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAcgcg > 2:1120709/1‑101 (MQ=255)
ggTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCgg > 1:1332710/1‑101 (MQ=255)
gTGCGG..GGGGAGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GGCGGGGCGAAACCCCCGGCTCCGTCCCAGAGGCTTTGGACCTCGGACCGGGCCACAccccga > 2:1069708/1‑96 (MQ=21)
cGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgc > 1:3848689/1‑101 (MQ=255)
cGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgc > 1:2073503/1‑101 (MQ=255)
|
AGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGC > NC_014034/2995525‑2995725
Base quality scores:
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 20 ≤
ATCG
< 31 ≤
ATCG
< 39 ≤
ATCG
|