| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 3,068,180 | T→C | 2.5% | intergenic (‑163/+129) | glcD ← / ← RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 3,068,180 | 0 | T→C | 2.5% | 2.2 ‑1.9 ‑0.8 | 161 | intergenic (‑163/+129) | glcD/RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (4/0): ref base (92/62): total (96/65) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.55e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.50e-01 | ||||||||||
Only 100 of 222 total aligned reads displayed.
GATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGT > NC_014034/3068080‑3068280
|
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCAt < 2:3059632/101‑1 (MQ=255)
tGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GACCAGCCGCCGCCCCGCCCATgg > 2:803277/1‑101 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATggc > 1:1600173/1‑101 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCAAggc > 1:2422370/1‑101 (MQ=255)
ggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATggc.g < 1:2683030/101‑1 (MQ=255)
cAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGGGCCCGCCCCGCCCACggc.ggg > 1:2116629/1‑101 (MQ=255)
tGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.tt > 2:183647/1‑101 (MQ=255)
tGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.tt > 1:719015/1‑101 (MQ=255)
tGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.tt < 1:4685412/101‑1 (MQ=255)
gccGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.Ttct < 1:1989997/100‑1 (MQ=255)
aCCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.Ttct > 1:2361329/1‑101 (MQ=255)
ccGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCACGGC.GGGC.GC.Ttctc > 2:1070868/1‑101 (MQ=255)
cGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTcg < 2:4398398/101‑1 (MQ=255)
cGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCATCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTcg < 1:4203364/101‑1 (MQ=255)
gAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCCTGGC.GGGC.GC.TTCTcgc > 2:1689756/1‑101 (MQ=255)
gAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATggc.gggc.ggcggcccc > 2:3509675/1‑93 (MQ=255)
gAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGG.GC.TTCTcgc > 2:2553393/1‑101 (MQ=255)
gAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTcgc < 1:3625977/101‑1 (MQ=255)
ggCCAGCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTcgcc.c < 2:3264755/101‑1 (MQ=255)
aTCGCCGAGGTCTTCCGTAAAAGTGGCCTCGGGACCGCCGAGGGCCCAAA.GCCCCCC.GCCCAGGGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCc.cgccg < 2:1159592/101‑1 (MQ=17)
tCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCgg < 1:1115787/101‑1 (MQ=255)
tCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCgg < 2:4188386/101‑1 (MQ=255)
cGCCGAGGTCATGCGGACCAGAAGTCCCGTGACCGCCGGGGGCCCAAA.GGCCCTC.GGCCTGCGCCCGCCCCGCCATCGGC.TGGC.GC.GGCTCCCCGCGCCgg > 2:1769600/1‑101 (MQ=18)
gCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCgggg < 1:2815010/101‑1 (MQ=255)
ccGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGgggc > 2:266490/1‑101 (MQ=255)
cGAGGTCATGCGGACCAGAAGTCCCGTGACCGCCGGGGGCCCAAA.GGCCCTC.GGCCTGCGCCCGCCCCGCCATCGGCGGGGG.GG.GTCCCGCC.CCCCGgggc > 1:2994341/1‑101 (MQ=18)
cGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGgggcg > 2:2715033/1‑101 (MQ=255)
cGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.CTCTCGCC.CCCCCgggcg > 2:1892998/1‑101 (MQ=255)
aGGTCATGCGGAACCGTGGCCCCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GTCCAGCGCCCTCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGgggcggg < 1:3504888/101‑1 (MQ=17)
aGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGgggcggg > 1:2000735/1‑101 (MQ=255)
ggTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGgggcgggg > 1:4386342/1‑100 (MQ=255)
gctgagtgggAACAGTGTCCTCGGGCCCGCCGAGAGCCCAAA.GGCCCTC.GGCCAGGGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGgggcgggc < 1:2570691/93‑1 (MQ=14)
tCATGCGGAACAGTGGCCTCGTGCCCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGgcgc < 1:2838527/101‑1 (MQ=255)
cATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGGGcc > 1:3151551/1‑101 (MQ=255)
aTGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGGGCCg > 1:4141514/1‑101 (MQ=255)
tGCGGAACAGTGGCCTCGTGCCCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCgg < 1:1019091/101‑1 (MQ=255)
tGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCgg > 1:3756844/1‑101 (MQ=255)
gggAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGcc < 2:4213703/100‑1 (MQ=255)
ggAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGG.GC.TTCTCGCC.CGCCGGGGGGGGGGCCCGccc > 2:2342314/1‑100 (MQ=17)
ggAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCCGccc > 1:3683921/1‑100 (MQ=255)
gAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGGGCCGGcccc > 1:1370634/1‑99 (MQ=255)
aCAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCccctc > 2:3639427/1‑100 (MQ=255)
cactGGCCTCGGGCCCGCCGGGGCCCCAAA.GGCCCCC.GGCCCGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTctgc < 1:3866927/98‑1 (MQ=11)
caatGGCCCCGTGACCGGCGAGGGCCCAAA.GGCCCTC.GGCCTGCGCCCGCCCCGCCATCGGC.GGGC.GCGGTCGCGCC.GCCCGGGGGGGGGGGCgggccccg > 2:1955833/4‑95 (MQ=17)
aGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCCGCCCctgct > 2:201624/1‑101 (MQ=255)
gTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGGGGCGGcccccgccg > 1:878104/1‑94 (MQ=14)
gggCCCCGTGCCCGCCGAGGGCCCAAG.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCtgctgc < 1:1425533/100‑1 (MQ=255)
ggcccTCGGGCCCGCCGAGGGCCCAAA.GGCCCTC.GGCCGGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCtgctgc < 2:3617322/98‑1 (MQ=14)
ggCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCCGC.CCCCGGGGCGGGGGGCGGCCCCCGCCgcg > 1:962572/1‑101 (MQ=14)
ggCCCCGTGACCGGCGAGGGCCCAAA.GGCCCTC.GGCCTGCGCCCGCCCCGCCATCGGC.GGGCGGC.GTCGCGCC.CCCCGGGGCGGGGGCGgggccgccggtg > 1:919207/1‑91 (MQ=14)
gCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTctgcccgat > 2:2196913/1‑96 (MQ=255)
cgcagTGACCCCCGAGTGCCCAAA..GCACTC.GGGCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.GTCTCGCC.CGCCGGGGCAGGCGCCGCCCCccgcttccccc > 2:4047176/5‑95 (MQ=14)
cGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCCgg > 1:4427523/1‑101 (MQ=255)
gggcccgccgAGGCCCCAAG.GCCCCTC.GGCCAGCCCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTggg < 1:333918/97‑1 (MQ=14)
gTGCCCGCGGAGGCCCCAAA.GGCCCCC.GCCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTggg < 2:3683967/101‑1 (MQ=14)
tGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCCGCCCCTGCCGCCCCCgggg > 1:4639127/1‑101 (MQ=14)
ccgcggGGGGCCGAAG.GCCCCCC.GCCCGGGGCCCCCCCCGCGCCTGGC.GGGC.GC.TTCCCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGaaa < 1:499123/101‑1 (MQ=9)
ccgcggGGGCCCCAAG.GCCCCTC.CGCCGGCGCCCGCCCCGCCCAGGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGaaa < 2:262263/101‑1 (MQ=14)
ccgccgGGGCCCCAAA.GCCCCTC.GCCCAGCCCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGaaa < 1:183672/101‑1 (MQ=14)
gacgcggccccAAT.GGCCCTC.GACCAGCCCCCCCCCCGCACGTGGC.GGGC.GC.TTCTGGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACg < 2:3896667/93‑1 (MQ=17)
ccgAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCCCTGCTGCGCCCGGGGGAACgg > 2:80737/1‑101 (MQ=255)
cccggggCCCAAACGCCCCGC.GGCCGGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACg < 2:1959938/97‑1 (MQ=14)
cgggggCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGt < 1:1719466/98‑1 (MQ=255)
cgAGGGCCCAAG.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGt < 1:1944472/101‑1 (MQ=255)
ccggggCCCAAA.GGCCCCC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGG.GC.TTCTCCCC.CCCCGGGGCGGGGGCCGGCCCCTGTCACGCCTtggggcaccgg > 1:1033255/4‑94 (MQ=14)
gAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCCCCGCCGCGCCCCGGGCAAccggt > 2:1305220/1‑97 (MQ=11)
gggCCCAAAGGGCCCCC.GCCCAGCCCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCt < 2:1010038/101‑1 (MQ=17)
ggccccACA.GCCCCCC.TGCCGGCGCCCCCCCCGCCCAGGGC.GGGC.CC.TTCTGGCC.CGCCGGGGGGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCtt < 2:2422235/98‑1 (MQ=17)
gcccgaagggCCCCC.GCCCGCCGCCCCCCCCGCCCATGGC.GGGC.GT.TTCGCGCC.GGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTg < 2:2913722/93‑1 (MQ=14)
gCCCAAAGGGCCCTC.GCCCGGCGCCCGCCCCGCCCATGGG.GGGC.GC.TTCTCGCC.CGCCGGGGGGGGCCCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTg < 2:45566/101‑1 (MQ=17)
gCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCCGGGGAAACGGTCTTgc > 2:1357513/1‑100 (MQ=255)
cccCAA.GGCCCCCGGGCCGGCGCCCCCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTgg < 2:3210680/101‑1 (MQ=17)
cccAAG.GGCCCCC.GGCCAGCGCCCCCCCCGCCCGTGGC.GGGC.GC.TTCTCGCC.CGCGGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGc < 1:1889427/101‑1 (MQ=17)
cAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGGGGCGGCCCCTGCCGCGCCCGGGGGAACGGGCTTGGCAc > 2:954342/1‑101 (MQ=17)
aaa.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGGGCCGGCCTCTGCCGCGCCCGGGGCAACGGTCTTGGCAcc > 1:1253773/1‑101 (MQ=17)
aa.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCCGGGGGAACGGTCTTTGGAccc > 1:2267131/1‑100 (MQ=17)
aa.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCCGGGGAAACGGGCTTGGCCccc > 1:2747626/1‑100 (MQ=255)
aggccccGC.GCCCAGCCCCCGCCCCGCCCAGGGG.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCg < 2:2107152/97‑1 (MQ=18)
a.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGGGCCCGCCTCTGCCGCGGCTGGGGGAACGGTCTTGGCACCGc > 2:568190/1‑101 (MQ=17)
ggCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGGAAAGGTCTTGGGACCGcc > 2:1627867/1‑101 (MQ=255)
gCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCGGCTGCGCCTGGGGAAACGGGCTTGGCACCGccc > 1:4053501/1‑101 (MQ=255)
cccGC.GCCCAGCCCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCg < 1:4473553/101‑1 (MQ=255)
cc.GGCCCGGGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGc < 1:3618130/100‑1 (MQ=255)
c.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCCCC.CGCCGGGGCGGGCGCCGGCCTCCGCTCCGCCTGGGGGAACGGGCTTGGGCCCGCCCGGGcc > 1:1816988/1‑100 (MQ=14)
ccAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGGCTTTGCACCGCCCGGGCTCcg > 2:774029/1‑101 (MQ=255)
cAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCcgg > 1:1195266/1‑101 (MQ=255)
cAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCcgg > 1:1398754/1‑101 (MQ=255)
cgcccgccCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCcggcgg > 2:1809897/1‑101 (MQ=255)
cccgccccgcCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCggcgggc < 2:2226956/101‑1 (MQ=255)
cgccccgcccATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGgcgggcgg > 2:2453636/1‑101 (MQ=255)
cccgcccAGGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGa < 2:4658082/101‑1 (MQ=255)
ccgcccAGGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGaa < 1:4574123/101‑1 (MQ=255)
cgcccAGGGC.GGGC.GC.TCCCCGCC.CGGCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGaaa < 2:4518328/101‑1 (MQ=25)
cccATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAgg > 2:67593/1‑101 (MQ=255)
cccATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAgg > 2:1569021/1‑101 (MQ=255)
ccATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGGGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGGAAGGc > 1:3612261/1‑101 (MQ=255)
aTGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGGAAGGCAg > 1:4543351/1‑101 (MQ=255)
tGGG.GGGG.GT.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGt < 1:2223196/101‑1 (MQ=255)
tGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGGGGGGGAAGGGAgg > 1:3256467/1‑100 (MQ=255)
tGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGGAAGGCAgg > 1:3378104/1‑100 (MQ=255)
|
GATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGC.GC.TTCTCGCC.CGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGT > NC_014034/3068080‑3068280
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 21 ≤
ATCG
< 31 ≤
ATCG
< 40 ≤
ATCG
|