Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_014034 | 1,575,638 | 5 bp→GGGGC | 100% | intergenic (+40/+129) | corA → / ← RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | NC_014034 | 1,575,638 | 0 | C→G | 100.0% | 100.5 | 28 | intergenic (+40/+133) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (0/28): ref base (0/0): total (0/28) | ||||||||||
* | NC_014034 | 1,575,639 | 0 | C→G | 100.0% | 98.7 | 28 | intergenic (+41/+132) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (0/28): ref base (0/0): total (0/28) | ||||||||||
* | NC_014034 | 1,575,640 | 0 | A→G | 100.0% | 94.5 | 28 | intergenic (+42/+131) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (0/28): ref base (0/0): total (0/28) | ||||||||||
* | NC_014034 | 1,575,641 | 0 | T→G | 100.0% | 74.6 | 28 | intergenic (+43/+130) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (0/27): ref base (0/1): total (0/28) | ||||||||||
* | NC_014034 | 1,575,642 | 0 | T→C | 100.0% | 95.8 | 28 | intergenic (+44/+129) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (0/28): ref base (0/0): total (0/28) |
CTGGGCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGCCATTTG.CGGCG.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCTGC > NC_014034/1575565‑1575723
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gtGGGCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGTCTGCCGCCC.CCC.GCACCCCCCGcc < 2:113408/100‑1 (MQ=255)
gggCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTg < 2:1706881/101‑1 (MQ=37)
ggCCTTCTGCAAATCGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGc < 1:4097898/101‑1 (MQ=25)
gCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCg < 1:4514799/101‑1 (MQ=37)
tcttcAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCggggg < 2:3120850/101‑1 (MQ=37)
ttcAAAAGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGAc < 1:795128/101‑1 (MQ=25)
ggAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTcc < 2:1035915/101‑1 (MQ=37)
aGGACTGGCTTTAGGGGTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTccccc < 1:348474/101‑1 (MQ=25)
aGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTccccc < 2:3721827/101‑1 (MQ=37)
ggACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCcg < 1:2304340/101‑1 (MQ=37)
gACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCcgc < 2:3068003/101‑1 (MQ=37)
aCTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCcgcg < 1:3698619/101‑1 (MQ=37)
ggCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGccc < 1:1778946/101‑1 (MQ=37)
gCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGcccc < 1:1074571/101‑1 (MQ=37)
ttAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCtt < 2:1789675/101‑1 (MQ=37)
tAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTg < 2:2581515/101‑1 (MQ=37)
tAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTg < 1:1501061/101‑1 (MQ=37)
tAGGGCTTGCGCCCCAGGGCGGCGCGGCCGCCCGGAAGGCGGGTGCCTG.CCGCC.CCCGGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTg < 2:61525/101‑1 (MQ=255)
aGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGc < 2:1397162/101‑1 (MQ=37)
ggcgcCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTAttt < 2:2628364/100‑1 (MQ=25)
gcgcCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTg < 1:3185570/101‑1 (MQ=37)
gcgcCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTg < 1:2175272/101‑1 (MQ=37)
cgcCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTgc < 2:1759380/101‑1 (MQ=37)
cgcCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTgc < 2:2983037/101‑1 (MQ=37)
gcgcgGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCaaga < 2:1119457/101‑1 (MQ=37)
cgcgGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCaagaa < 1:2271754/101‑1 (MQ=37)
cgGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAagaaga < 2:4106934/101‑1 (MQ=37)
ggCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAgaagaa < 2:318212/101‑1 (MQ=37)
gCTCGGGCCCCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGaaa < 2:1726160/101‑1 (MQ=25)
gcgcCCGGAACGCGGGGGGCTGCCGCCC.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCTg < 1:1526349/101‑1 (MQ=37)
cgcCCGGAACGCGGGGGGCTG.CCGCCCCCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCTGc < 1:2524521/101‑1 (MQ=37)
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CTGGGCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGCCATTTG.CGGCG.CCC.GCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCTGC > NC_014034/1575565‑1575723
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
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