| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,047 | Δ1 bp | 3.2% | intergenic (+95/‑147) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,047 | 0 | G→. | 3.2% | 8.0 ‑0.4 ‑1.7 | 156 | intergenic (+95/‑147) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (4/1): ref base (89/62): total (93/63) | ||||||||||
| Fisher's exact test strand distribution p-value = 6.49e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.03e-02 | ||||||||||
Only 100 of 178 total aligned reads displayed.
AGTAA.GGGGGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AGCAGAAGGGGGGCAAGCG.C.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGC > NC_014034/2493948‑2494146
|
aGTAAGGGGGGGGCGCTGACCCCAGTCCGCAAGCGGACTTCCCCCGTTATATTTGCAGCAAGATGAAACCGGATTGCTTTCATATTGCCCGAAATATCCCg > 2:826774/1‑101 (MQ=18)
gtaaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgg > 1:551448/6‑101 (MQ=255)
gtaaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgg > 2:50858/6‑101 (MQ=255)
taaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCCAGATGAAACCGGGTGCCTTTCATCTTGCCCGAAATATTCCggg > 2:1893391/5‑101 (MQ=18)
taaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCggg > 1:3848389/5‑101 (MQ=255)
aaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggg > 1:3722445/4‑101 (MQ=255)
aaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggg < 1:2046447/98‑1 (MQ=255)
ggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggggg > 2:2513676/2‑101 (MQ=255)
gggggCGCTGCCCCCCGTGCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATCAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGa < 1:5026068/101‑1 (MQ=18)
ggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATTCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGaa < 2:1670615/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCCGGCTATTTGCAGCAAGATGAAACCGGAAGCATTTCCTCTTTCCCGAAAAATCCCggggggggcat > 1:1162576/1‑96 (MQ=17)
ggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.Tg < 2:4312072/101‑1 (MQ=255)
ggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.Tg < 1:2366847/101‑1 (MQ=255)
gcgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGCAATATCCCGGGGGGTGAA.Tgg < 1:2876840/101‑1 (MQ=255)
gcgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.Tgg > 2:4718543/1‑101 (MQ=255)
cgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGc < 1:4217268/101‑1 (MQ=255)
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g > 2:2348482/1‑101 (MQ=255)
ccTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g < 1:1388401/100‑1 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aag > 1:4935839/1‑99 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc < 1:3490442/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc < 2:1958789/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc < 1:2236576/101‑5 (MQ=255)
cccccCGTCCGCAAGCGGCCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagc < 2:3354399/101‑4 (MQ=21)
cccccCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagc < 1:779015/101‑4 (MQ=255)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAAAATCCCGGGGGGTGAA.TGGC..G.aagccag > 1:2081755/5‑95 (MQ=21)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGCAATATCCCGGGGGGCGAA.TGGC..G.aagccagagg > 2:4054418/2‑92 (MQ=18)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagagg < 2:4234184/100‑10 (MQ=255)
tCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagaggg < 1:1113887/101‑11 (MQ=255)
aaGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCa > 2:2286492/1‑101 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCagc < 2:2245006/101‑3 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCagcgc > 1:4922635/1‑97 (MQ=17)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCagcgc > 1:4959002/1‑97 (MQ=17)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCG.c.c > 1:2912258/1‑101 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCG.c.c > 1:1658484/1‑101 (MQ=17)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCG.c.c.c > 2:380330/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGTTGAAACCGGATGCCCTTCATCTTGCCCGAAATATCCCGGGGGGTGAG.TCGC..GAAGCCACAGGGGGGC.AGCG.c.c.cc > 2:1792817/1‑101 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCG.c.c.cccc < 2:4222518/101‑2 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AGGCCAAGAGGGGGCAGCG.C.C.CCCTGCCCcg > 1:414303/1‑101 (MQ=2)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcg < 1:4273383/101‑1 (MQ=17)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcg > 1:4557965/1‑101 (MQ=17)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcg < 1:1580824/101‑1 (MQ=17)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AGGCCAAGAGGGGGCAGCG.C.C.CCCTGCCCcgc > 1:1106325/1‑100 (MQ=2)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AAGCCAGAGGGGGCCAGCGCC.C.CCCTGCCCcgg > 1:1500262/1‑101 (MQ=18)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..GAAGCCAGAGGGGGGCAGCGG.C.C.CCCTGCCCcgg > 2:3780334/1‑101 (MQ=17)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcggc > 1:1947906/1‑101 (MQ=17)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcggcg > 1:2956470/1‑101 (MQ=17)
atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcggcgg > 2:715411/1‑101 (MQ=18)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTcc > 1:3887436/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGGcc > 1:3779656/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGCcc > 1:3021628/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGG.GAGCG.C.CGCCCTGCCCCGGCGGTcc > 2:1902392/1‑101 (MQ=18)
tGCACNNAGATGCAACCGGATTCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTcc < 1:1976333/101‑1 (MQ=14)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcggcggggcgt > 2:4463382/1‑96 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTggc < 2:256841/101‑1 (MQ=17)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTggcgg > 2:3403828/1‑101 (MQ=18)
gATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTggcggc > 1:991197/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCt < 2:5000912/101‑1 (MQ=17)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCtt < 2:2912032/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 2:3904594/101‑1 (MQ=17)
ccGGATGCCTTTCATCTTCCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGa < 2:1609947/101‑1 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg < 2:3017367/101‑1 (MQ=17)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgg > 1:4469323/1‑101 (MQ=18)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGAGAA.TGGC..GAAGCCAGAGGGGGGC.AGCA.CAC.CCCTGCCCCGGCGGTCCGTGGCGGGGCCCTGAcgg > 1:836473/1‑101 (MQ=12)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc < 1:740217/101‑1 (MQ=17)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGT.GCGGCGCCTTGAcgggcg > 2:218413/1‑101 (MQ=17)
tttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg < 2:4831782/101‑1 (MQ=17)
tttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg > 2:1200603/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg > 2:3039833/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACCGGCggggg > 2:2228155/1‑101 (MQ=17)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGG.AAGCGCC.C.CCCTGCCCCGGCGGGCCGCGGCGGCGCCTTGCGGGGCggggg > 2:1531078/1‑101 (MQ=9)
tCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTCCCCCGGCGGTCCGTGGCGGCGCCTTGACCGGGgggggg > 2:1239428/1‑100 (MQ=9)
aTCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcgc > 2:3072130/1‑101 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg > 2:364132/1‑101 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg > 2:4429714/1‑101 (MQ=18)
cTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCgg > 1:3428738/1‑101 (MQ=18)
cTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCgg > 1:3041789/1‑101 (MQ=18)
tGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGc < 1:3325569/101‑1 (MQ=18)
tGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGc < 2:1954602/101‑1 (MQ=18)
gccGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt > 2:2132524/2‑101 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt < 1:2606143/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt > 2:2835915/1‑101 (MQ=18)
cgcaaTATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTa < 2:4256508/98‑1 (MQ=18)
cGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTa < 2:2942581/101‑1 (MQ=18)
cGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTGGACGGGCGGGGGCGCgggactga > 2:3170134/1‑96 (MQ=17)
gAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 1:2443983/101‑1 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGGCGGGCGGGGGCGCGGGCATTAAc < 2:1701948/101‑1 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc > 2:4202196/1‑101 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc > 1:3127500/1‑101 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCCCGGGGATTAAc > 2:1249508/1‑101 (MQ=18)
aaaTATCCCGGGGGGAGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGAGGTCCGTGGCGGCGCCTTGACGGGCGGAGGCGCGGGCATTAAc > 2:590399/1‑101 (MQ=18)
atatCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGTGGGCATTAACCg < 1:2733563/101‑1 (MQ=18)
tatCCGGGGGGGTGAA.TGCC..GAAGCCAGAGGGGGGCAGCCC.C.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGa < 1:2004203/101‑1 (MQ=25)
atCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaa < 2:551369/101‑1 (MQ=21)
atCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGG.AGCCC.C.C.CCCTGCCCCGGCGGGCCGGTGGGGCGCCTTGGCCGGGGGGGGGGGGGGGATTTACCCaaa > 1:3547767/1‑101 (MQ=2)
agcccGGGGGGGGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaa < 1:305762/99‑1 (MQ=21)
tCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:4718866/101‑1 (MQ=21)
cccGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAt < 2:3722167/101‑1 (MQ=21)
cccGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAt < 1:234970/101‑1 (MQ=21)
cGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCG.CAC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGGGGGGGCGCGGGCGTTAACCGAAATTg > 2:298908/1‑101 (MQ=21)
ggggggTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc < 1:4782575/101‑1 (MQ=25)
|
AGTAA.GGGGGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AGCAGAAGGGGGGCAAGCG.C.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGC > NC_014034/2493948‑2494146
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|