| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,876,588 | Δ1 bp | 2.9% | intergenic (+87/‑106) | RCAP_rcc02685 → / → prfA | glutathione S‑transferase/peptide chain release factor 1 |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,876,588 | 0 | G→. | 2.9% | 2.4 ‑2.5 ‑1.0 | 102 | intergenic (+87/‑106) | RCAP_rcc02685/prfA | glutathione S‑transferase/peptide chain release factor 1 |
| Reads supporting (aligned to +/- strand): new base (3/0): ref base (42/57): total (45/57) | ||||||||||
| Fisher's exact test strand distribution p-value = 8.26e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.10e-01 | ||||||||||
Only 100 of 113 total aligned reads displayed.
CCGAACCGGCGTGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATCCC.CGCCCACCCCCGCCCACCCTTGACCCAGAGCCCGGTCTCGGTC > NC_014034/2876488‑2876683
|
gAACCGGCGTGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACggg > 1:8309/1‑101 (MQ=255)
aaCCGGCGTGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACgggg > 2:3970660/1‑101 (MQ=255)
ccGGCGTGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCa > 1:2994682/1‑101 (MQ=255)
ccGGCGTGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCa > 1:2976797/1‑101 (MQ=255)
ccGGCGTGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCa < 2:2757750/101‑1 (MQ=255)
ggCGTGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCacc > 1:400361/1‑99 (MQ=255)
ggCGTGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAgc < 2:4795219/101‑1 (MQ=255)
ggCGTGATCCGCCGCGCCCCCCTGCTTTTTCTTGGGGAAAATCCGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAgc < 1:1399519/101‑1 (MQ=255)
ggCGTGATCCGCCGCGCCCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAgc < 1:1789580/101‑1 (MQ=255)
ttggtCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.Gcc < 2:3548867/97‑1 (MQ=255)
gTGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCCGC.Gcc > 2:751770/1‑101 (MQ=255)
gTGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.Gcc > 2:5047844/1‑101 (MQ=255)
gTGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.Gcc < 1:114099/101‑1 (MQ=255)
tGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.Gccc < 2:8301/101‑1 (MQ=255)
gATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.Gcccc < 1:3970952/101‑1 (MQ=255)
aTCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.Gccccc < 1:614289/101‑1 (MQ=255)
cgccgcGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCcccgcc < 1:2248369/101‑1 (MQ=255)
gccgcGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCcccgccc < 1:1017603/101‑1 (MQ=255)
gccgcGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCccccccc > 1:229068/1‑101 (MQ=255)
ccgcGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCcccgcccg < 2:2189985/101‑1 (MQ=255)
ccgcGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCcccgcccg < 1:467866/101‑1 (MQ=255)
cgcgcgCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCgg < 1:4963050/101‑1 (MQ=255)
cgcCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCGGGGCg > 1:3408047/1‑101 (MQ=255)
ccccTGCTTTTTCTTGGGGAAAATGCGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.cc < 2:3864156/101‑1 (MQ=255)
ccccTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCGGGTCggc > 1:720942/1‑99 (MQ=255)
ccTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.cccc < 2:294346/101‑1 (MQ=255)
cTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.g < 1:995316/101‑1 (MQ=255)
cTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCAGTTCAAG.CCCGATGAACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.g < 2:3307888/101‑1 (MQ=255)
gCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.ggg < 1:4667552/101‑1 (MQ=255)
tttttCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCCGGGCG.CCCC.GGgcg > 1:1423016/1‑101 (MQ=255)
ttttCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGgcgc < 2:2486293/101‑1 (MQ=255)
ttttCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCCGGGCG.CCCC.CGgggc > 2:4339639/1‑101 (MQ=25)
ttttCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCCGGGCG.CCCC.GGgcgc > 1:1719753/1‑101 (MQ=255)
tttCTTGGGGAAAATGCGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.a < 2:3539406/101‑1 (MQ=255)
tttCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCCGGGCG.gcccacggggc > 2:3411131/1‑94 (MQ=37)
ttCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCCGGGGC.CCCC.CGgcgccg > 1:3124730/1‑99 (MQ=25)
tCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.c > 1:515402/1‑101 (MQ=255)
tCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.c < 2:4855464/101‑1 (MQ=255)
tCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCCGGGCG.CCCC.cgggccccc > 1:4556377/1‑95 (MQ=25)
tGGGGAAAATACGCGGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.cccc < 2:400296/101‑1 (MQ=255)
tGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.cccc > 2:446315/1‑101 (MQ=255)
tGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCCGGGCG.CCCC.GGGCGC.CG.cccc > 1:832551/1‑101 (MQ=255)
tGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCCGGGCG.CCCC.CGGGGC.AG.cccc > 2:3901479/1‑101 (MQ=25)
tGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCGGGGCG.CCCC.GGGCGC.AG.cccc > 2:1616680/1‑101 (MQ=255)
gggAAGATGCGCCGGCGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCgg < 2:850717/101‑1 (MQ=255)
gggAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCgg < 1:274831/101‑1 (MQ=255)
ggAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCggg < 2:4016387/101‑1 (MQ=255)
ggAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCggg < 1:2991532/101‑1 (MQ=255)
ggAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGGCC.GCCC.GGGCGCAAG.CCCCgg > 2:2180986/1‑101 (MQ=25)
gAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCGGGGCG.CCCC.GGGGGC.AG.CCCCcggg > 1:623575/1‑101 (MQ=37)
gAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCCGGGCG.CCCC.CGGCGC.CG.CCCCcggg > 2:3838357/1‑101 (MQ=37)
aaaaTACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGc < 2:1405471/101‑1 (MQ=255)
aaaTACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCg < 2:3502181/101‑1 (MQ=255)
aaaTACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCg < 1:446380/101‑1 (MQ=255)
aaaTACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCCGGGCC.CCCC.CCGGGC.CG.CCCCGGGGCg > 1:3114414/1‑101 (MQ=21)
tatcccggggggTCGTCCATTGGGGCACCATCGGCTCAAGACCCGATGGACGAC.GGGCGGA.GCCCCCGGCGGGGGGG.CCCC.GGGGGA.CG.CCCCCGGGGGaa > 1:952668/8‑101 (MQ=21)
aTACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGaa < 1:1687760/101‑1 (MQ=255)
aTACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCGGGGCG.CCCC.CGGCGC.AC.CCCCCGGGCgca > 1:4015300/1‑99 (MQ=25)
aTACGCCGGGGGCCGTCCATTGCGGCGCCATCGGTTCAAC.CCCGATGGACGACCGGGCAGCGGCCCCCCCCCGGGGGC.CCCC.CGCCGC.GC.CCCCGGGGGGa > 1:3783039/1‑101 (MQ=255)
cGCCGGCGGTCGTCCATTGCGGCGACATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATc < 2:2372725/101‑1 (MQ=255)
ccGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc < 2:611896/101‑1 (MQ=255)
ccGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc < 2:2832016/101‑1 (MQ=255)
ccGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc < 2:2962760/101‑1 (MQ=255)
ccGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGGCG.CCCC.GGGCGC.AG.CCCCGGGGCGGAATccc > 1:615411/1‑101 (MQ=255)
ccGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCCGGGCG.CCCC.CGGCGC.CG.CCCCCGGGCGGAAAccc > 2:4532707/1‑101 (MQ=25)
gggggTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCCGGGCG.CCCC.CGGCGC.CGCCCCCGGGGGGAAACccc.c > 1:3830460/1‑101 (MQ=21)
gggggTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCCCGGCT.CCCCGGGGGGC.GG.CCCCGGGGGGAAACccc.c > 2:4295743/1‑101 (MQ=21)
gggTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.CG.CCCCCGGGCGAAAAccc.cccc > 1:2379364/1‑101 (MQ=37)
gggTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc.cgcc < 1:565260/101‑1 (MQ=255)
gggGCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc.cgcc < 2:3960048/101‑1 (MQ=255)
ggTCGTCCATTGCGGCGCCATCGGTTAAAG.CCCGATAGACGACGGGGCAGA.GCCCCCGCCCGGGACG.CCCC.GGGCGC.AG.CACCGGGGCGAAATccc.cgccc > 1:347174/1‑101 (MQ=38)
gtcgtcCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc.cgccca < 2:3558587/101‑1 (MQ=255)
gtcgtcCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc.cgccca < 2:1007812/101‑1 (MQ=255)
tcgtcCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc.cgcccac < 2:2994454/101‑1 (MQ=255)
tcgtcCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc.cgcccac < 2:515323/101‑1 (MQ=255)
cgccgagcgcggcgCCATCGGTTCAAG.CCGGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc.cgcccacc < 2:92721/93‑1 (MQ=255)
gtcCATTGGGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc.cgcccaccc < 1:935206/101‑1 (MQ=255)
gtcCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCCGGGCGGAAAccc.cgccccccc > 2:4986054/1‑101 (MQ=37)
tccctggcggccCCATCGGTTCAAG.CCTGATGGACGACGGGGCCGC.GCCCCCGCCCGGGTCG.CCCC.GGGCCC.AG.CCCCGGGGCGAAATccc.cgcccacccc < 2:311807/95‑1 (MQ=37)
ccATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCTGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc.ctcccaccccc < 2:347121/101‑1 (MQ=255)
cATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCCGGGCG.CCCC.CGGCGC.CGCCCCCGGGGGGAAACccc.ccccccccccc > 1:3831407/1‑101 (MQ=255)
aTTGGGGCACCATCGGCTCAAGACCCGATGGACGAC.GGGCGGA.GCCCCCG.GCGGGTCGCCCCC.GGGGGC.CN.CCNNCGGGGGAAACccc.agcaccccccaca > 1:3477126/1‑98 (MQ=19)
tGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGGCG.CCCC.CGGCGC.CG.CCCCCGGGGGGAAAccc.ccccccccccccccc > 2:2731055/1‑101 (MQ=25)
tGCGCCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATccc.cgcccacccccgccc < 1:2269238/101‑1 (MQ=255)
ggggcaCCATCGGCTCAAGACCCGATGGACGAC.GGGCGGA.GCCCCCG.GCGGGGCG.CCCC.GGGCGC.AA.GCCCCAGGCGGAATCccgagcccccccccgaccc > 1:4795501/3‑100 (MQ=21)
ggcgCCATCGGTTCAAG.CCCGATGGACGACGGGGCCGC.GCCCCCGCCCGGGTCC.CCCC.CGGCCC.AG.CCCCCGGGGGCAACTac.cgcccacccccgcccccc > 2:498682/1‑101 (MQ=255)
cgcCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATCCC.CGCCCACCCCCGCCCACCCt < 2:3484268/101‑1 (MQ=255)
gcCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATCCC.CGCCCACCCCCGCCCACCCtt < 1:4827413/101‑1 (MQ=255)
ccATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCCGGGCG.CCCC.CGGCGC.AA.CCCCCGGGCGGAAACCC.CCCCCACCCCCCCCCCCCCCTg > 2:2191757/1‑101 (MQ=255)
cATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCCCCCCGGGCG.CCCC.CGGCGC.CGCCCCCGGGGGGAAACCCC.CCCCCCCCCCCCCCCCCCCttc > 2:1034121/1‑100 (MQ=255)
cATCGGTTCAAG.CCCGATGGAAGACGGGGCAGC.GCCCCCCCCCGGGGCG.CCCC.GGGCGC.CG.CCCCGGGGGGGAAACCc.cgcccacccccccccccccctta > 1:2872600/1‑97 (MQ=255)
tCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATCCC.CGCCCACCCCCGCCCACCCTTGAcc < 2:1719623/101‑1 (MQ=255)
gTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATCCC.CGCCCACCCCCGCCCACCCTTGACCCag < 1:2088226/101‑1 (MQ=255)
aaG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATCCC.CGCCCACCCCCGCCCACCCTTGACCCAGAGcc < 2:2052344/101‑1 (MQ=255)
aG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATCCC.CGCCCACCCCCGCCCACCCTTGACCCAGAGccc < 2:3863284/101‑1 (MQ=255)
g.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATCCC.CGCCCACCCCCGCCCACCCTTGACCCAGAGCCCg < 1:3429316/101‑1 (MQ=255)
gATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATCCC.CGCCCACCCCCGCCCACCCTTGACCCAGAGCCCGGtct < 1:1616812/101‑1 (MQ=255)
gATGGACGACGGGGCAGC.GCCCCCGCCCGGGGCG.CCCC.GGGGGC.CG.CCCCCGGGCGAAAACCC.CCCCCCCCCCCCCCCCCCCCTGGCCCCCAGccccggcc > 1:4192151/1‑96 (MQ=255)
aTGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATCCC.CGCCCACCCCCGCCCACCCTTGACCCAGAGCCCGGtctc < 1:4986384/101‑1 (MQ=255)
ggACGACGGGGCAGC.GCCCCCGCCCGGGGCG.CCCC.CGGCGC.CG.CCCCCGGGGGAAAACCC.CCCCCCCCCCCCCCCCCCCCCTACCCACAACCCCGtctccg > 2:1966472/1‑99 (MQ=255)
|
CCGAACCGGCGTGATCCGCCGCGCGCCCCTGCTTTTTCTTGGGGAAAATACGCCGGGGGTCGTCCATTGCGGCGCCATCGGTTCAAG.CCCGATGGACGACGGGGCAGC.GCCCCCGCCCGGGTCG.CCCC.GGGCGC.AG.CCCCGGGGCGAAATCCC.CGCCCACCCCCGCCCACCCTTGACCCAGAGCCCGGTCTCGGTC > NC_014034/2876488‑2876683
Base quality scores:
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 23 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|