| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,395,692 | +T | 8.6% | intergenic (+504/‑427) | RCAP_rcc01306 → / → RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,395,692 | 1 | .→T | 8.6% | 75.1 ‑1.8 0.0 | 232 | intergenic (+504/‑427) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (7/13): ref base (111/101): total (118/114) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.64e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
Only 100 of 253 total aligned reads displayed.
TCGAAACCACCTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGATCG > NC_014034/1395592‑1395791
|
cGAAACCACCTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.g < 2:1740618/101‑1 (MQ=255)
taaaCCACCTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.Gc < 2:2145235/100‑1 (MQ=255)
aaCCACCTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCg < 1:2624974/101‑1 (MQ=255)
aaCCACCTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCg < 2:3815001/101‑1 (MQ=255)
accaccTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGGG..G..GCAGTTCGA.GCCGc > 1:1953396/1‑101 (MQ=255)
accaccTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGc > 1:4538627/1‑101 (MQ=255)
accaccTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGc > 2:4399477/1‑101 (MQ=255)
cccTTGCGGATTGTCACTTTCGCGGGGCGAAGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGt < 1:2087942/100‑1 (MQ=255)
cTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCg > 2:3218459/1‑101 (MQ=255)
cTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGCTCGA.GCCGCAGTCg > 1:4360436/1‑101 (MQ=255)
gCGGATTGTCTCTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTc < 1:2165062/101‑1 (MQ=255)
gCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTc > 1:823628/1‑101 (MQ=255)
cGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTcc < 1:2733478/101‑1 (MQ=255)
gATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTcccc > 1:3359698/1‑101 (MQ=255)
gATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTcccc > 2:3063894/1‑101 (MQ=255)
ttGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTcccccc > 2:4413192/1‑101 (MQ=255)
ttGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTcccccc > 1:2653001/1‑101 (MQ=255)
tGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCcg > 2:1144047/1‑101 (MQ=255)
tGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCcg < 2:2587669/101‑1 (MQ=255)
cTTTCGCGGGGCGAGGCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCgggg < 2:4204907/101‑1 (MQ=255)
cTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCgggg > 2:3282321/1‑101 (MQ=255)
ttCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGc > 1:1020281/1‑101 (MQ=255)
gcgGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTg < 2:2207154/101‑1 (MQ=255)
gggggCGAAGCGTCGCCCCCCCCGGGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTgg < 1:8585/100‑1 (MQ=255)
gggggCGAAGCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTgg < 1:1100674/100‑1 (MQ=255)
cgGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTgg < 2:3615212/101‑1 (MQ=255)
ggggCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGa > 1:2585481/1‑101 (MQ=255)
ggggCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGa < 2:2230151/101‑1 (MQ=255)
gggCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGAt > 1:4273876/1‑101 (MQ=255)
gccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCG..GC.GAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGTGGAt > 1:1698323/7‑101 (MQ=2)
gCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCg > 1:3793015/1‑101 (MQ=255)
ccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCG..GC.GAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGTGGATc < 1:3172332/96‑1 (MQ=2)
ccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCG..GC.GAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGTGGATc < 1:2234570/96‑1 (MQ=2)
cGAAGCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGa < 1:3419938/101‑1 (MQ=255)
gctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCG..GC.GAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGa > 1:2233440/4‑101 (MQ=2)
gctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCG..GC.GAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGa > 1:4118330/4‑101 (MQ=2)
ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCG..GC.GAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa < 2:5020392/99‑1 (MQ=2)
ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCG..GC.GAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa < 2:2016318/99‑1 (MQ=2)
ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCG..GC.GAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa < 1:2523865/99‑1 (MQ=2)
tgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGGTATGGCGTCGGTGTCA..GGTTTTCCA.GCGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGaaa > 2:804286/2‑101 (MQ=2)
aGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc > 2:3435013/1‑101 (MQ=255)
aGCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc < 1:2762736/101‑1 (MQ=255)
gCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGGAACt > 2:3517962/1‑101 (MQ=255)
gCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt < 1:59184/101‑1 (MQ=255)
cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTg > 2:4326350/1‑101 (MQ=255)
cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCG..GC.GAACACCGA.TACCGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAca > 1:4298074/1‑100 (MQ=2)
tcccTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGt < 1:3689995/98‑1 (MQ=255)
gcGCCCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGt < 2:2724383/100‑1 (MQ=255)
cTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATg > 1:4599649/1‑101 (MQ=255)
tCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATgg > 2:2805090/1‑101 (MQ=255)
tCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCG..GC.GAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGGGGGGGTCGAAAcacccatg > 1:1714131/1‑94 (MQ=2)
cccccccGGGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATgg < 2:4906255/100‑1 (MQ=255)
cccccccGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATgg < 1:2853699/100‑1 (MQ=255)
ccccccGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGCG..GCAGGGTTTCCA.GCGGC.GTCCCTCCCCCCCCGGGGGCGGGGATCGAAAcccgccccg > 1:2049403/1‑93 (MQ=0)
cccccGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGAt < 1:299709/101‑1 (MQ=255)
cccccGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGAt > 2:1041889/1‑101 (MQ=255)
cccccGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGAt < 1:3621762/101‑1 (MQ=255)
ccccGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATc < 2:1935384/101‑1 (MQ=255)
gcgGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGgc > 1:1235156/1‑101 (MQ=255)
gcaggggCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGgc > 1:2892064/4‑101 (MQ=255)
gggCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCaa < 1:3254446/101‑1 (MQ=255)
ggCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCaaa > 1:728828/1‑101 (MQ=255)
ggCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCaaa > 2:521171/1‑101 (MQ=255)
gTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACgg > 1:1530876/1‑101 (MQ=255)
gTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGAGCGAAACTGGTATGGATCTGGCGCAAACgg > 2:479927/1‑101 (MQ=255)
tGGATCGAAACATCTGCATGTAGTGGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGa < 2:1860631/101‑1 (MQ=255)
tGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGa > 1:4838796/1‑101 (MQ=255)
ggATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGaa < 2:3976818/101‑1 (MQ=255)
ggATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGaa < 1:4171172/101‑1 (MQ=255)
gcctCGAAACTCCTGCATGTAGGCGGCG..G..GCGGTTGGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGaa < 2:678962/98‑1 (MQ=37)
gATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGaaa > 2:3665253/1‑101 (MQ=255)
gATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGaaa > 1:138248/1‑101 (MQ=255)
cGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTc < 2:2886316/101‑1 (MQ=255)
cGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTc > 1:516782/1‑101 (MQ=255)
cGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTc > 2:4527218/1‑101 (MQ=255)
cGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGCATGGATCTGGCGCAAACGGAAAGTc > 2:291157/1‑101 (MQ=255)
aaaCATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTg < 1:89681/101‑1 (MQ=255)
aaaCATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTg > 1:3585406/1‑101 (MQ=255)
cATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTgtcg > 2:4155464/1‑101 (MQ=255)
cATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTgtcg < 1:4909450/101‑1 (MQ=255)
ctCTGCATGTGGCGGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTgtcgt < 2:1548907/100‑1 (MQ=255)
aTCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTgtcgt < 2:1616498/101‑1 (MQ=255)
aTGTAGTCGGCG..G..GAAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.cc < 1:3124245/101‑1 (MQ=255)
tGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.ccc > 2:228840/1‑101 (MQ=255)
ggTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAACGTCTGTCGTCGCT.ccc < 1:4413511/100‑1 (MQ=255)
gTAGTCGGGG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.cccc < 1:1161287/101‑1 (MQ=255)
gTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.cccc < 2:4599327/101‑1 (MQ=255)
gTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.cccc > 1:3087414/1‑101 (MQ=255)
cggcg..g..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.CCCCCcgcg > 1:2091024/1‑101 (MQ=255)
ggcg..g..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.CCCCCCGCgg > 2:2121547/1‑101 (MQ=255)
ggcg..g..GCAGTGCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.CCCCCCGCgg < 2:3864247/101‑1 (MQ=255)
g..gCGGTCCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.CCCCCCGCGGGGGc < 1:3888888/101‑1 (MQ=255)
gCAGTGCGA.GCCGCAGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCTCCCCCCCGCGGGGGc < 2:2617497/101‑1 (MQ=38)
aGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTg < 1:323472/101‑1 (MQ=255)
aGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTg > 2:3345035/1‑101 (MQ=255)
aGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCN.CCCCCCGCGGGGGCGTg > 2:1196052/1‑101 (MQ=255)
tCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGAt > 2:4982523/1‑101 (MQ=255)
ccGA.GCCGCCGTCGCCCCCCCCGCGGGGGCGTTGATCGAAACTGGTATGGATCTGGCCCAAACGGAAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGAt < 1:2138346/100‑1 (MQ=38)
cGA.GCCGCAGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGATc < 2:4260367/101‑1 (MQ=255)
gA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGATCg < 1:2328698/101‑1 (MQ=255)
|
TCGAAACCACCTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCG..G..GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGATCG > NC_014034/1395592‑1395791
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|