BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	1,396,961	+G	11.1%	coding (843/1578 nt)	RCAP_rcc01307 →	hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	1,396,961	1	.→G	11.1%	139.0 ‑1.3 ‑0.7	397	coding (843/1578 nt)	RCAP_rcc01307	hypothetical protein
Reads supporting (aligned to +/- strand): new base (25/19): ref base (168/185): total (193/204)
Fisher's exact test strand distribution p-value = 2.66e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.86e-01

Only 100 of 440 total aligned reads displayed.


TCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTGGATCG  >  NC_014034/1396861‑1397061


 cGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGCCGTCGCTCCACCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCG.TCCGc.c                                                                                                         >  2:1467948/1‑101 (MQ=255)


  gAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.Ct                                                                                                        >  2:1694137/1‑101 (MQ=255)


   aaaCCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTAGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTg                                                                                                       >  1:4520050/1‑101 (MQ=255)


       cGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.Tg                                                                                                <  2:3053645/101‑1 (MQ=255)


              gagaTAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.CG.GTCGCTc                                                                                        >  1:722720/1‑101 (MQ=255)


               agaTAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTcc                                                                                       >  2:1233636/1‑101 (MQ=255)


                gaTAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CCG..CG.Gg.ggccccccc                                                                                      >  1:3424814/1‑93 (MQ=37)


                 aTAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTcccc                                                                                     >  2:1439239/1‑101 (MQ=255)


                   agcccGCGCGGACCTCCTCAGACGTCGCCCCCCCCGCGTGGGCGTGGATCGAAAC.A.GCCG.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTgccccc                                                                                   <  2:225060/98‑1 (MQ=38)


                   aGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTcccccc                                                                                   <  2:3374768/101‑1 (MQ=255)


                   aGACCGCGCGGACCTCCTCACACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTcccccc                                                                                   <  1:879192/101‑1 (MQ=255)


                    gACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCcg                                                                                  <  1:2897212/101‑1 (MQ=255)


                      ccGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCcgcg                                                                                >  2:4995430/1‑101 (MQ=255)


                        gcgcgGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCggg                                                                              >  2:1112714/1‑101 (MQ=255)


                             gACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGt                                                                         <  2:1809747/101‑1 (MQ=255)


                             gACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGt                                                                         <  2:2958992/101‑1 (MQ=255)


                               ctcgcggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.ATGGCTATGGCG.G..C.AGT.G.TCAGGT.T.TTC.CAG..CG.GC.GTCGCTCCCCCCGCGGGGGCGTg                                                                        <  1:4689136/91‑1 (MQ=0)


                                ggtcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTgg                                                                       >  1:4002526/11‑101 (MQ=9)


                                attggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TATGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGGGCGTGGa                                                                      >  1:15020/11‑101 (MQ=0)


                                 tcctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGGGGAt                                                                     >  1:1894328/1‑101 (MQ=255)


                                  tggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TATGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                                    >  1:1945509/9‑101 (MQ=2)


                                  cctcgcaCGTCGGCCCCCCCGCCGGGGCGTGGATGGAAGCAA.TGCG.GCGCG.G..G.CCC.A.T.GGCT.GCCGG.ACC..CGCCC.GTCGCTCCCCCCGCGGGGGCGTGGAt                                                                     <  2:4801567/95‑1 (MQ=0)


                                  cctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                                    <  1:579960/101‑1 (MQ=255)


                                   cggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.ATGGCTATGGCG.G..C.AGT.G.TCAGGT.T.TTC.CAG..CG.GC.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                                    <  2:4132904/95‑1 (MQ=2)


                                   caacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                                    <  2:2347530/94‑1 (MQ=9)


                                   caacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                                    <  2:951001/94‑1 (MQ=9)


                                    ggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.ATGGCTATGGCG.G..C.AGT.G.TCAGGT.T.TTC.CAG..CG.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCg                                                                   <  2:2755801/96‑1 (MQ=2)


                                    aacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCCCCCCCCGCGGGGGGGGGGGTCg                                                                   >  1:3902051/7‑101 (MQ=2)


                                     cAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                                                 >  1:2062391/1‑101 (MQ=255)


                                       tgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.ATGGCTATGGCG.G..C.AGT.G.TCAGGT.T.TTC.CAG..CG.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                                <  1:180527/99‑1 (MQ=2)


                                       gACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                               <  1:3771865/101‑1 (MQ=255)


                                       cccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AGCGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                                  <  1:4788053/99‑1 (MQ=2)


                                       actgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                                <  2:1145673/98‑1 (MQ=9)


                                        cggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TATGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct                                                              <  2:4723137/99‑2 (MQ=2)


                                         ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TATGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActa                                                             <  1:2001456/100‑3 (MQ=2)


                                         ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TATGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActa                                                             >  1:4124903/2‑99 (MQ=2)


                                         cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt                                                             <  1:4972877/101‑1 (MQ=255)


                                          gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AGCGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                               >  1:440269/1‑101 (MQ=2)


                                          gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.ATGGCTATGGCG.G..C.AGT.G.TCAGGT.T.TTC.CAG..CG.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAccc                                                             >  1:4469845/1‑99 (MQ=2)


                                          gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGGTCGAAActc                                                             >  1:1057255/1‑99 (MQ=9)


                                           tCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa                                                           <  1:1600159/101‑1 (MQ=255)


                                           tCGCCCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa                                                           <  2:2644406/101‑1 (MQ=255)


                                            cGCTCCCCCCGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AGCGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACac                                                             >  1:1221739/1‑100 (MQ=2)


                                            cGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TATGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGTGCGTGGATCGAAActaaac                                                          >  2:4009691/1‑96 (MQ=2)


                                            cGCCCCCCCCGCGGGGGCGTGGATCGAAAC.T.TGAT.GCCCA.GATC.CGCAA.TCGGC...CGGG.CTC..GA.TC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcctat                                                           <  2:2876833/101‑5 (MQ=0)


                                             gCTCCCCCCGCGGGGGCGTGGATTGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGATCCCCCCGCGGGGGGGTGGTTCGAAACATAAGc                                                         >  1:4064415/1‑101 (MQ=37)


                                             gCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGc                                                         >  1:3242347/1‑101 (MQ=255)


                                             gCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TATGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActacacc                                                         <  1:2155961/101‑7 (MQ=2)


                                             gCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggc                                                          <  2:359292/101‑6 (MQ=9)


                                             gCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggc                                                          >  1:4218476/1‑96 (MQ=9)


                                             ccTCCCCCCGCGGGGGCGGGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCacc                                                         <  2:4909765/100‑3 (MQ=255)


                                              cTCCCCCCGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AGCGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCa                                                           <  2:2053069/101‑1 (MQ=2)


                                              cTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATGGAAActcggcc                                                         >  2:319463/1‑95 (MQ=9)


                                              cTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcc                                                         <  1:2835879/101‑7 (MQ=9)


                                                ccccccGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGCTCGAAActcggcctc                                                       >  2:664684/1‑93 (MQ=9)


                                                ccccccGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctc                                                       <  1:970883/101‑9 (MQ=9)


                                                 cccccGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctcg                                                      <  1:1301550/101‑10 (MQ=9)


                                                 cccccGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctcg                                                      <  2:1579696/101‑10 (MQ=9)


                                                  ccccGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtcgtc                                                    >  2:3471824/1‑101 (MQ=255)


                                                  ccccGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTTTGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctcga                                                     <  1:3534010/101‑11 (MQ=2)


                                                    ccGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AGCGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaatgccg                                                     <  2:1387004/101‑7 (MQ=0)


                                                    ccGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTcgtcgt                                                  <  1:2943651/101‑1 (MQ=255)


                                                      gcgGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGATg                                                >  2:4255975/1‑101 (MQ=255)


                                                       cgGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTgg                                               <  1:1394581/101‑1 (MQ=255)


                                                       cgGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTgg                                               >  1:639669/1‑101 (MQ=255)


                                                       cgGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.GG.GTCGCTCCCCCCGCGGGGGCGTGGATCGGAACATCAGCTCGTCGTTgg                                               >  1:3792349/1‑101 (MQ=255)


                                                         ggggCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCAGCTCGTCGTTGGTc                                             >  2:4542878/1‑101 (MQ=255)


                                                             ggTGGATAGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGcc                                         <  2:747199/100‑1 (MQ=255)


                                                              ggggATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCg                                        <  1:2199597/99‑1 (MQ=255)


                                                              gTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCg                                        <  1:3623409/101‑1 (MQ=255)


                                                                  aTCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACg                                    <  1:2350078/101‑1 (MQ=255)


                                                                    cGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGAt                                  >  2:4433771/1‑101 (MQ=255)


                                                                     gAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATg                                 >  1:309201/1‑101 (MQ=255)


                                                                     gAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATg                                 >  2:4320729/1‑101 (MQ=255)


                                                                       aaC.A.GCCT.GGGCG.G..C.CTC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTc                               <  1:1468078/101‑1 (MQ=255)


                                                                       aaC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTc                               <  1:1694266/101‑1 (MQ=255)


                                                                       aaC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTc                               >  1:3387275/1‑101 (MQ=255)


                                                                        aC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTcc                              <  2:196544/101‑1 (MQ=255)


                                                                         c.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCg                             <  1:2595785/101‑1 (MQ=255)


                                                                         c.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCg                             >  1:4876284/1‑101 (MQ=255)


                                                                             gCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTc                           <  2:2825696/101‑1 (MQ=255)


                                                                             gCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTc                           <  1:2753155/101‑1 (MQ=255)


                                                                               cT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGc                         >  2:3896688/1‑101 (MQ=255)


                                                                                  gggcg.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.GG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTc                       <  2:3748452/99‑1 (MQ=255)


                                                                                        g..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTcccccc                  <  2:1305157/101‑1 (MQ=255)


                                                                                        g..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTcccccc                  <  1:2427407/101‑1 (MQ=255)


                                                                                           c.cGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCcg                 <  2:309148/101‑1 (MQ=255)


                                                                                           c.cGC.A.CCGGCT.TCCGC.CTG..CG.GG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCTCTCCCCCcg                 <  2:3265388/101‑1 (MQ=255)


                                                                                              gC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCcgcg               >  2:4655587/1‑101 (MQ=255)


                                                                                               c.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCgg              >  1:2300340/1‑101 (MQ=255)


                                                                                                 a.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCggg             >  2:56684/1‑101 (MQ=255)


                                                                                                   tCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCgggg            >  1:4265896/1‑101 (MQ=255)


                                                                                                   tCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCgggg            <  2:1894191/101‑1 (MQ=255)


                                                                                                        t.tCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCTGACGATGTCCGTCGCTCCCGCCGCGGGGGCGTg       >  1:4344578/1‑101 (MQ=255)


                                                                                                        t.tCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTg       >  1:3681461/1‑101 (MQ=255)


                                                                                                          tCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTgg      >  2:1006465/1‑101 (MQ=255)


                                                                                                             cc.cTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTGGATc   <  1:2680102/100‑1 (MQ=255)


                                                                                                              c.cTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTGGATCg  <  1:3211217/101‑1 (MQ=255)


                                                                                                              c.cTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTGGATCg  >  2:2561308/1‑101 (MQ=255)


                                                                                                              c.cTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTGGATCg  <  1:2251628/101‑1 (MQ=255)


TCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TCCGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTGGATCG  >  NC_014034/1396861‑1397061

Base quality scores:


ATCG

< 3 ≤


ATCG

< 17 ≤


ATCG

< 24 ≤


ATCG

< 33 ≤


ATCG

< 40 ≤


ATCG