BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	1,396,964	+A	11.2%	coding (846/1578 nt)	RCAP_rcc01307 →	hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	1,396,964	2	.→A	11.2%	172.2 ‑1.4 ‑0.3	385	coding (846/1578 nt)	RCAP_rcc01307	hypothetical protein
Reads supporting (aligned to +/- strand): new base (24/19): ref base (158/184): total (182/203)
Fisher's exact test strand distribution p-value = 2.59e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.08e-01

Only 100 of 436 total aligned reads displayed.


AAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA  >  NC_014034/1396864‑1397064


  aCCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..Cg                                                                                                      >  2:1096149/1‑101 (MQ=255)


    cGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.Tg                                                                                                   <  2:3053645/101‑1 (MQ=255)


     ggTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CCG..CG.Tg.g                                                                                                 >  2:1399264/1‑101 (MQ=255)


            agaTAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTcc                                                                                          <  1:2909133/101‑1 (MQ=255)


              aTAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTC..CG.TG.GGCGCTcccc                                                                                        >  2:1226999/1‑101 (MQ=255)


                aGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTcccccc                                                                                      <  2:228429/101‑1 (MQ=255)


                 gACCGCGCGGACCTCCTCAGACGTCGCTCCCGCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCcg                                                                                     >  1:4485513/1‑101 (MQ=255)


                   ccGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCcgcg                                                                                   >  2:4995430/1‑101 (MQ=255)


                      cgcgGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCgggg                                                                                <  1:3991391/101‑1 (MQ=255)


                         ggACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCg                                                                             >  2:1847137/1‑101 (MQ=255)


                          gACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGt                                                                            <  2:2958992/101‑1 (MQ=255)


                             tcgcggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.ATGGCTATGGCG.G..C.AGT.G.TCAGGT.T..TTC.CAG..CG.GC.GTCGCTCCCCCCGCGGGGGCGTgg                                                                          <  1:4696864/92‑1 (MQ=0)


                             tcgcggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.ATGGCTATGGCG.G..C.AGT.G.TCAGGT.T..TTC.CAG..CG.GC.GTCGCTCCCCCCGCGGGGGCGTgg                                                                          <  2:1455824/92‑1 (MQ=0)


                             ctcctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGa                                                                         <  1:2808515/101‑1 (MQ=255)


                              tcctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGAt                                                                        <  1:2447335/101‑1 (MQ=255)


                              gtcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTT.TGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGa                                                                         >  2:4264088/10‑101 (MQ=9)


                               tggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TA.TGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                                       >  1:1945509/9‑101 (MQ=2)


                               tggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TA.TGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                                       >  1:1501469/9‑101 (MQ=2)


                               cctcgcaCGTCGGCCCCCCCGCCGGGGCGTGGATGGAAGCAA.TGCG.GCGCG.G..G.CCC.A.T.GGCT.GC.CGG.ACC..CGCCC.GTCGCTCCCCCCGCGGGGGCGTGGAt                                                                        <  2:4801567/95‑1 (MQ=0)


                               cctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                                       >  2:2606539/1‑101 (MQ=255)


                                ctcAGACGTCGCCCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCATGGATCg                                                                      <  2:3920075/101‑1 (MQ=255)


                                cggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.ATGGCTATGGCG.G..C.AGT.G.TCAGGT.T..TTC.CAG..CG.GC.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                                       <  2:4132904/95‑1 (MQ=2)


                                cccgcccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AG.CGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGa                                                                         <  1:719953/95‑1 (MQ=2)


                                caacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTT.TGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                                       <  2:951001/94‑1 (MQ=9)


                                 tcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                                     <  2:1290338/101‑1 (MQ=255)


                                 ggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.ATGGCTATGGCG.G..C.AGT.G.TCAGGT.T..TTC.CAG..CG.GC.GTCGCTCCCCCCGCGGGGGCGGGGACCg                                                                      >  2:2397628/6‑101 (MQ=0)


                                 ccAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                                     <  1:2218559/100‑1 (MQ=255)


                                 aacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTT.TGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCg                                                                      >  1:4290267/7‑101 (MQ=9)


                                  cAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGGGGATCGaa                                                                    >  1:635910/1‑101 (MQ=255)


                                  acactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTT.TGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                                     >  1:4947849/6‑101 (MQ=9)


                                    tgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.ATGGCTATGGCG.G..C.AGT.G.TCAGGT.T..TTC.CAG..CG.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                                   <  1:180527/99‑1 (MQ=2)


                                    ccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TA.TGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                                  <  2:665092/98‑1 (MQ=2)


                                    actgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTT.TGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                                   >  1:1898214/4‑101 (MQ=9)


                                      ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TA.TGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActa                                                                <  1:2001456/100‑3 (MQ=2)


                                      cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AG.CGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                                   <  1:2838087/101‑1 (MQ=2)


                                       gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AG.CGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                                  >  1:412049/1‑101 (MQ=2)


                                       gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTT.TGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGGTCGAAActc                                                                >  1:1057255/1‑99 (MQ=9)


                                       gTCGCCCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc                                                               <  1:2606720/101‑1 (MQ=255)


                                       gTCGCCCCCCCCGCGGGGGCGTGGATCGAAAC.A.CCCT.GCGCC.G..C.AGC.G.AGTGCG.TCTGGA.ACA..GG.AT.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActa                                                                <  2:4434227/101‑3 (MQ=2)


                                        tCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AG.CGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa                                                                 <  2:3735872/101‑1 (MQ=2)


                                        tCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa                                                              <  1:1600159/101‑1 (MQ=255)


                                        tCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa                                                              >  1:4860951/1‑101 (MQ=255)


                                        gcGCCCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTTGATCGAAACATCa                                                              <  2:2129897/100‑1 (MQ=255)


                                         cGCTCCCCCCGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AG.CGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACac                                                                <  2:1704308/101‑2 (MQ=2)


                                         cGCTCCCCCCGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AG.CGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACac                                                                >  1:1221739/1‑100 (MQ=2)


                                         cGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TA.TGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGTGCGTGGATCGAAActaaac                                                             >  2:4009691/1‑96 (MQ=2)


                                         cGCCCCCCCCGCGGGGGCGTGGATCGAAAC.T.TGAT.GCCCA.GATC.CGCAA.TCGGC...C.GGG.CTC..GA.TC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcctat                                                              <  2:2876833/101‑5 (MQ=0)


                                          gCTCCCCCCGCGGGGGCGTGGATTGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGATCCCCCCGCGGGGGGGTGGTTCGAAACATAAGc                                                            >  1:4064415/1‑101 (MQ=37)


                                          gCTCCCCCCGCGGGGGCGTGGATCGAAAC.ATGGCTATGGCG.G..C.AGT.G.TCAGGT.T..TTC.CAG..CG.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcccgcc                                                             <  1:3386612/101‑6 (MQ=2)


                                          gCTCCCCCCGCGGGGGCGTGGATCGAAAC.A..ACT.GACC.....C.GGC.A.ACGGCC.TA.TGCGCTGGACG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActacacc                                                            <  1:2155961/101‑7 (MQ=2)


                                          gCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.TCGGATCTT.TGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggc                                                             <  1:4247461/101‑6 (MQ=9)


                                          gCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTT.TGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggc                                                             <  2:359292/101‑6 (MQ=9)


                                          ccTCCCCCCGCGGGGGCGGGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCacc                                                            <  2:4909765/100‑3 (MQ=255)


                                           cacccccgGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCt                                                           <  1:4995760/99‑1 (MQ=255)


                                           cTCCCCCCGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AG.CGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCa                                                              <  1:3411648/101‑1 (MQ=2)


                                           cTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCATCt                                                           >  2:1133706/1‑101 (MQ=255)


                                           cTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTT.TGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATGGAAActcggcc                                                            >  2:319463/1‑95 (MQ=9)


                                            tCCCCCCGCGGGGGCGTGGATCGAAAC.T.GCGT.GCGCG.C..CATGA.ATTCATCG.AG.CGC.CAT..CG.AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAccccaa                                                             >  1:23676/1‑96 (MQ=2)


                                            tCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTT.TGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcct                                                           <  2:4739187/101‑8 (MQ=9)


                                            cccccccGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtc                                                          <  2:2759261/100‑1 (MQ=255)


                                              cccccGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtcgt                                                        <  1:3876262/101‑1 (MQ=255)


                                              cccccGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTT.TGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctcg                                                         <  1:1301550/101‑10 (MQ=9)


                                              cccccGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCG..C.CGC.G.CCGGATCTT.TGT.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctcg                                                         <  2:1579696/101‑10 (MQ=9)


                                               ccccGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtcgtc                                                       >  2:3471824/1‑101 (MQ=255)


                                                 ccGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTcgtcgt                                                     <  1:2943651/101‑1 (MQ=255)


                                                 ccGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTcgtcgt                                                     >  2:1004960/1‑101 (MQ=255)


                                                  cgcgGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGtt                                                    <  1:950904/101‑1 (MQ=255)


                                                  cgcgGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGtt                                                    <  1:210884/101‑1 (MQ=255)


                                                    cgGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTgg                                                  <  1:1394581/101‑1 (MQ=255)


                                                    cgGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTgg                                                  <  1:2689497/101‑1 (MQ=255)


                                                    cgGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.GG.GTCGCTCCCCCCGCGGGGGCGTGGATCGGAACATCAGCTCGTCGTTgg                                                  >  1:3792349/1‑101 (MQ=255)


                                                    cgGGGGCGGGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTgg                                                  <  1:2315381/101‑1 (MQ=255)


                                                     gggggCGTGGATCGAAAC.A.TCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.CG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCCCGTCGTTGGt                                                 >  1:877486/1‑101 (MQ=255)


                                                     gggggCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGt                                                 >  1:4378169/1‑101 (MQ=255)


                                                     gggggCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGt                                                 <  2:2651635/101‑1 (MQ=255)


                                                      ggggCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCAGCTCGTCGTTGGTc                                                >  2:4542878/1‑101 (MQ=255)


                                                         gCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGc                                             >  2:779099/1‑101 (MQ=255)


                                                         gCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGc                                             <  2:3336316/101‑1 (MQ=255)


                                                          cGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGcc                                            <  1:3496113/101‑1 (MQ=255)


                                                           gTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCg                                           <  1:3623409/101‑1 (MQ=255)


                                                             ggATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGa                                         >  1:375204/1‑101 (MQ=255)


                                                              gATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGAc                                        <  1:3229515/101‑1 (MQ=255)


                                                                  gAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATg                                    >  2:4320729/1‑101 (MQ=255)


                                                                  gAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATg                                    >  1:309201/1‑101 (MQ=255)


                                                                    aaC.A.GCCT.GGGCG.G..C.CTC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTc                                  <  1:1468078/101‑1 (MQ=255)


                                                                    aaC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTc                                  <  1:1694266/101‑1 (MQ=255)


                                                                     aC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTcc                                 >  2:1913806/1‑101 (MQ=255)


                                                                          gCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTc                              <  2:2825696/101‑1 (MQ=255)


                                                                               gcgcG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTc                          >  2:1358561/1‑101 (MQ=255)


                                                                                        c.cGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCcg                    <  2:309148/101‑1 (MQ=255)


                                                                                        c.cGC.A.CCGGCT.TC.CGC.CTG..CG.GG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCTCTCCCCCcg                    <  2:3265388/101‑1 (MQ=255)


                                                                                           gC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCcgcg                  <  1:4434090/101‑1 (MQ=255)


                                                                                           gC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCcgcg                  >  2:4655587/1‑101 (MQ=255)


                                                                                              a.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCggg                >  2:56684/1‑101 (MQ=255)


                                                                                                     t.tC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTg          >  1:3681461/1‑101 (MQ=255)


                                                                                                       tC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTgg         <  2:1969976/101‑1 (MQ=255)


                                                                                                        c.cGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTGGa        <  1:4543198/101‑1 (MQ=255)


                                                                                                           cgtcTG..CG.TG.GTCGCCCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTGGAt       <  1:3176767/98‑1 (MQ=255)


                                                                                                            c.cTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTGGATCg     <  1:2251628/101‑1 (MQ=255)


                                                                                                              cTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTGGATCGa    <  1:4209733/101‑1 (MQ=255)


AAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.A.GCCT.GCGCG.G..C.CGC.A.TCGGCT.TC.CGC.CTG..CG.TG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA  >  NC_014034/1396864‑1397064

Base quality scores:


ATCG

< 3 ≤


ATCG

< 15 ≤


ATCG

< 23 ≤


ATCG

< 33 ≤


ATCG

< 39 ≤


ATCG