| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,721,519 | +GG | 100% | intergenic (‑414/+32) | RCAP_rcc01588 ← / ← RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,721,519 | 1 | .→G | 100.0% | 73.6 | 22 | intergenic (‑414/+32) | RCAP_rcc01588/RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
| Reads supporting (aligned to +/- strand): new base (4/18): ref base (0/0): total (4/18) | ||||||||||
| * | NC_014034 | 1,721,519 | 2 | .→G | 100.0% | 73.8 | 22 | intergenic (‑414/+32) | RCAP_rcc01588/RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
| Reads supporting (aligned to +/- strand): new base (4/18): ref base (0/0): total (4/18) | ||||||||||
TCGGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCC..GGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCT > NC_014034/1721419‑1721600
||
tcgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACccgcc > 2:875428/1‑101 (MQ=255)
tcgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACccgcc > 2:2032792/1‑101 (MQ=255)
tcgGGTTCCAAATAACGCGATGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACccgcc > 2:3787981/1‑101 (MQ=255)
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACccgcc..g > 2:2438155/1‑101 (MQ=255)
cgGGTTCCAAATAACGCGATGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACccgccc > 1:1067830/1‑100 (MQ=255)
gggTTCCTAATTACGCGCGGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACccgcc..gc > 2:2120762/1‑100 (MQ=255)
ttCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCC..ggggg > 2:4948504/1‑99 (MQ=255)
ccAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACccgcc..gccaccg > 2:1531424/1‑95 (MQ=255)
cAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCC..gggggcgg > 2:3827733/1‑96 (MQ=255)
aaaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACccgccccgggcggg > 1:4938488/1‑92 (MQ=255)
aaaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCC..cgggggggg > 2:2752698/1‑95 (MQ=255)
aaaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCC..CGGCGgc.gg > 2:3799906/1‑100 (MQ=255)
aaaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTCGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCC..cgggggggg > 2:2570268/1‑95 (MQ=38)
aaaTAACGCGATGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCC..ggggggggg > 2:2242413/1‑95 (MQ=255)
aaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCC..ggggggtgcg > 2:845891/1‑94 (MQ=255)
aaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCC..cgggggggcg > 2:387813/1‑94 (MQ=255)
aaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCC..cggggctggg > 2:3143570/1‑94 (MQ=255)
tAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCC..gggggggtcgcc > 2:4957594/1‑92 (MQ=255)
gCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCCGGGGGCTGC.GCCCCCGGGacccccc > 2:3368219/1‑101 (MQ=21)
cgccgttgtttTTTTTTGGCCCGC.TCGCGGGGGGCTTT.CCGCCTCGGCTGCGCC.GCGGCCCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGAtct < 2:3349831/93‑1 (MQ=255)
gCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCCGGGGGCTGC.GCCCCCGGAccccccccccaactctca > 2:786842/1‑91 (MQ=18)
ccttgtttTTTTTTGGCCCGG.TC.CCTTTGGGGTT.TCCCCCCGGGCGCCCCGGGGGCCCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAg < 1:2267532/96‑1 (MQ=255)
tttttttTTTTGTGG.CGGG.TCGCTTGGGGGTTT.CCGCCCCGCCTGCGCC.GGGGCCCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGAt < 2:3651932/97‑1 (MQ=255)
ttttTTTTTGGG.CCGG.TCGCTTTGGGGTTC.CCCCCGCGGCGGCGCC.GGGCCGCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCAc < 2:2542221/100‑1 (MQ=255)
tttTTTTTTGG.GCGGCTCGCCGTGGGGTTC.CCCCCTGGGCTCCCCC.GGGGCGCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCAc < 1:2712723/101‑1 (MQ=255)
tttTTTTTGGG.CCGG.TCGCTTGGGGGTTT.CCCCCCCGGCCGCGCC.GAGGCGCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCAcc < 2:1510533/101‑1 (MQ=255)
tttTTTTTGGG.CCGG.CCGCCTGGGGGTTT.CCCCCGCGGCGCCGCC.GGGCCCCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCAcc < 1:1040009/101‑1 (MQ=255)
tttATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCCGGGGGGGGCGGCCCCCGGCCCCCCCCCGCAGAACTCCGATAAc > 2:4955203/1‑101 (MQ=18)
ttttgggg.CGGG.TCGCTTGGGGGTTT.CCCCCCCGGCCGCCCC.GGGGCCCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTg < 1:3127593/95‑1 (MQ=255)
gg.CGGG.TCCGCTGGGGGCTT.CCCCCCCGGCGGCCCC.GAGCCGCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGc < 1:2293005/101‑1 (MQ=255)
gg.CCGG.TCGCTGGGGGGTTT.CCGCCGCGCCGGCGCC.GAGGCCCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGc < 2:1192935/101‑1 (MQ=255)
cgggctcTTGGGGTTTCTCCCCGCGGCGCCGCC.GAGCCCCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTg < 1:707492/95‑1 (MQ=255)
cgcttgggggATT.CCGCCCCGCCCGCGCG.GGGGCCCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGa < 2:2046805/95‑1 (MQ=16)
ttGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCCGGGGGGCGC.GCCCCCGGGCCCCCCCCCGAGAACTCCAATCACCCTGACCTCCGCGCCCAcccg > 2:4948916/1‑99 (MQ=9)
gggtgtgccGCCGCGGCCGCCCC.GCGGCCCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGc < 2:1104749/93‑1 (MQ=21)
cccggggCGGCGCC.GCGCCGCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGAt < 2:4013435/96‑1 (MQ=25)
ccgcGGCCGCGCC.GGGGCCCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATa < 2:3138965/98‑1 (MQ=255)
ggCTGCGCC.GAGGCGACCCGCCGGGGGCTGG.GCCCCCCGGCCCCCCCCCCAGATCCCAGATCACCTTGGCCCCCGTGCCGACCGGGCAGAGCGGGTAAAGt > 2:3352190/1‑101 (MQ=16)
cgccgcC.GGGGCCCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTc < 1:4945350/98‑1 (MQ=255)
cgcgcgcggggCGCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTc < 2:128103/92‑1 (MQ=255)
gcgcC.GGGGCCCCCCGCCGGGGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCt < 2:2999016/101‑1 (MQ=37)
||
TCGGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGG.TCGCCTTGGGGATT.TCGCCTCGGCTGCGCC.GAGGCGACCCGCC..GGGCTGC.GCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCT > NC_014034/1721419‑1721600
Base quality scores:
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 27 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|