BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	1,823,740	+C	100%	intergenic (+25/‑148)	RCAP_rcc01687 → / → RCAP_rcc01688	HK97 family phage major capsid protein/hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	1,823,740	1	.→C	100.0%	97.4	195	intergenic (+25/‑148)	RCAP_rcc01687/RCAP_rcc01688	HK97 family phage major capsid protein/hypothetical protein
Reads supporting (aligned to +/- strand): new base (116/48): ref base (1/30): total (117/78)
Fisher's exact test strand distribution p-value = 4.25e-13
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.50e-02

Only 100 of 224 total aligned reads displayed.


CTATGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.A.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGTCTGC  >  NC_014034/1823640‑1823832


ctATGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.Ca.a                                                                                                   >  2:2317496/1‑101 (MQ=255)


ctATGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.Ca.a                                                                                                   >  2:180795/1‑101 (MQ=255)


 tATGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.A.c                                                                                                 >  1:2235213/1‑101 (MQ=255)


 tATGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.A.c                                                                                                 <  1:2601023/101‑1 (MQ=255)


  aTGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.A.c.c                                                                                               >  2:3752098/1‑101 (MQ=255)


  aTGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.A.c.c                                                                                               <  1:2049986/101‑1 (MQ=255)


  aTGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.A.c.c                                                                                               >  1:613256/1‑101 (MQ=255)


     ggAGCAAGCGGTTGGGCGGCGATGTCAGCGATTTCGCCGAGATCAAGCTGTTAAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.A.c.c.ccg                                                                                           <  2:1175631/100‑3 (MQ=255)


     cGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.A.c.c.ccg                                                                                           <  1:1791098/101‑3 (MQ=255)


         cAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTg                                                                                      >  1:2931763/1‑101 (MQ=255)


           aGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTgcc                                                                                    >  1:806045/1‑101 (MQ=255)


           aGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTgcc                                                                                    <  1:3086021/101‑1 (MQ=255)


            gCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTgccg                                                                                   >  2:4393073/1‑101 (MQ=255)


              gggTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTgccgcc                                                                                 >  1:4116021/1‑101 (MQ=255)


                gTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCgg                                                                               >  1:2562271/1‑101 (MQ=255)


                gTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCgg                                                                               >  1:1368764/1‑101 (MQ=255)


                 tGGGCGGGGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGt                                                                              <  1:503059/101‑1 (MQ=255)


                  gggCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGtt                                                                             >  2:5000880/1‑101 (MQ=255)


                   ggcggcGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTc                                                                            <  2:1557561/101‑1 (MQ=255)


                    gcggcgATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGTGGGGGG.GA.A.CGC.C..CACTGTCGCCGGCTCg                                                                           >  2:2526581/1‑101 (MQ=255)


                       gcgATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCg                                                                        >  2:2112708/1‑101 (MQ=255)


                        cgATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.GA.ACC.C.C..GGCTGCCGCCGGTTCGCCgg                                                                       >  1:2056435/1‑101 (MQ=255)


                        cgATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCgg                                                                       >  1:2918922/1‑101 (MQ=255)


                         gATGTCAGCGATTTCGCCGCGATCAAGCTGTTGGCGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGt                                                                      <  1:4334880/101‑1 (MQ=255)


                         gATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCggc                                                                      >  2:3455428/1‑100 (MQ=255)


                         gATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGt                                                                      <  2:3291093/101‑1 (MQ=255)


                         gATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGt                                                                      >  1:2866568/1‑101 (MQ=255)


                         gATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGt                                                                      >  1:371334/1‑101 (MQ=255)


                         gATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGGTCGCCGGt                                                                      >  2:4929182/1‑101 (MQ=255)


                            gTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTcgg                                                                   >  1:4964522/1‑101 (MQ=255)


                            gTCAGCGATTTCGCCGCGATCAAGATGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTcgg                                                                   >  2:4733802/1‑101 (MQ=255)


                             tCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTcggg                                                                  <  2:1931632/101‑1 (MQ=255)


                              cAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGGTGCCGCCGGTTCGCCGGTcgggc                                                                 >  2:1081827/1‑101 (MQ=255)


                              cAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTcgggc                                                                 >  2:559409/1‑101 (MQ=255)


                                 cGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTcgggcggg                                                              <  2:3649254/101‑1 (MQ=255)


                                  gATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCgggcgggc                                                             >  1:890017/1‑101 (MQ=255)


                                  gATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCgggcgggc                                                             <  1:2262724/101‑1 (MQ=255)


                                  gATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCgggcgggc                                                             <  1:4470074/101‑1 (MQ=255)


                                  gATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCAGGTCgggcgggc                                                             >  1:1995259/1‑101 (MQ=255)


                                    tttCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGgcgggcgc                                                           >  2:3049646/1‑101 (MQ=255)


                                     ttCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTcgggcggggggg                                                          >  1:3547548/1‑97 (MQ=255)


                                      tCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGgcgggcgcgg                                                         >  1:1690779/1‑101 (MQ=255)


                                          cgcgATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCtt                                                     <  1:1503425/101‑1 (MQ=255)


                                           gcgAGCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTc                                                    <  2:4194507/101‑1 (MQ=255)


                                            cgATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTcc                                                   >  2:796915/1‑101 (MQ=255)


                                              aTCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCgg                                                 >  2:771587/1‑101 (MQ=255)


                                               tCAAGCTGTTGAAGTTTGCAGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGc                                                >  2:2059361/1‑101 (MQ=255)


                                                cAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGcc                                               >  1:2374234/1‑101 (MQ=255)


                                                cAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGcc                                               <  2:4916250/101‑1 (MQ=255)


                                                 aaGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCg                                              >  1:11251/1‑101 (MQ=255)


                                                 aaGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCg                                              >  1:1604384/1‑101 (MQ=255)


                                                   gCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCt                                            >  2:1435549/1‑101 (MQ=255)


                                                    cttttaaggTTTGCCGCCTGGAAAGGGGGGGAGAGGGGGCGGGGGA.CA.C.C.C.CG.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTg                                           <  1:969987/93‑1 (MQ=255)


                                                    cTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTg                                           >  2:2888885/1‑101 (MQ=255)


                                                      gtggAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGcc                                         <  1:3838869/98‑1 (MQ=255)


                                                      gTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGcc                                         >  1:3686750/1‑101 (MQ=255)


                                                      gTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGcc                                         >  1:3434985/1‑101 (MQ=255)


                                                       ttGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CACC.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCt                                        <  2:4338884/101‑1 (MQ=255)


                                                        tGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTa                                       >  2:2435044/1‑101 (MQ=255)


                                                        tGAAGTTGGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CACC.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTa                                       <  1:4425176/101‑1 (MQ=255)


                                                            gTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAgctg                                   >  1:3191055/1‑101 (MQ=255)


                                                             tttGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAgctgc                                  >  2:1896636/1‑101 (MQ=255)


                                                               tGCCGCCTCGTAGCGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctc                                <  1:3621/101‑1 (MQ=255)


                                                               tGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCCAGCTGctc                                >  2:131830/1‑101 (MQ=255)


                                                                gccgccTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctcc                               >  2:1512962/1‑101 (MQ=255)


                                                                gccgccTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctcc                               <  1:4737086/101‑1 (MQ=255)


                                                                 ccgccTCGGATCGGGGGGGGAAGGGGCGGGGGG.CACC.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctccc                              <  2:1582828/101‑1 (MQ=255)


                                                                  cgccTCGTAGCGGGCGGGGAAGGGGGCGGGGG.CACC.C.C.C..GTCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctccct                             <  1:4398053/101‑1 (MQ=255)


                                                                   gccTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctccctc                            >  2:3148132/1‑101 (MQ=255)


                                                                   gccTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctccctc                            >  1:1250230/1‑101 (MQ=255)


                                                                   gccTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctccctc                            <  1:3049884/101‑1 (MQ=255)


                                                                   cccTCGTAACGGGCGGTGAAGGGGCCGGGGG.CACC.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctccctc                            <  1:180811/100‑1 (MQ=255)


                                                                     cTCGTAACGGGGGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccg                          <  1:532894/101‑1 (MQ=255)


                                                                     cTCGTAACGGGCGGTGAAGGGGCCGGGGG.CAGC.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccg                          <  1:1637018/101‑1 (MQ=255)


                                                                       cGTAACGGGCGGTGAAGGGGCCGGGGG.CACC.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtc                        <  1:4536011/101‑1 (MQ=255)


                                                                       cGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtc                        >  1:1038404/1‑101 (MQ=255)


                                                                       cGTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtc                        >  2:1395494/1‑101 (MQ=255)


                                                                        gTAAGGGGCGGTGAAGGGGCGGGGGG.CACC.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtcc                       <  1:1815506/101‑1 (MQ=255)


                                                                        gTAACGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtcc                       >  1:274819/1‑101 (MQ=255)


                                                                        gTAACGGGCGGGGAAGGGGCCGGGGG.TA.C.C.CGC..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtcc                       <  1:1658270/101‑1 (MQ=255)


                                                                         tAACGGGGGGGGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtccg                      <  2:4151137/101‑1 (MQ=255)


                                                                         tAACGGGCGGTGAGGGGGCCGGGGG.CACC.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtccg                      <  1:4283394/101‑1 (MQ=255)


                                                                          aaCGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtccca                     >  2:2076961/1‑99 (MQ=255)


                                                                          aaCGGGCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGa                     >  2:4852748/1‑101 (MQ=255)


                                                                           aCGGGCGGGGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAg                    <  1:4870565/101‑1 (MQ=255)


                                                                             gggCGGTGAGGGGCCCGGGGG.CACC.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTg                  <  2:3508102/101‑1 (MQ=255)


                                                                              ggCGGTGAAGGGGCCGGGGG.CACC.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTgg                 <  1:247952/101‑1 (MQ=255)


                                                                              ggCGGTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCCAGTgc                 >  2:168779/1‑100 (MQ=255)


                                                                               gCGGTGAGGGGGCGGGGGG.CACC.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGc                <  1:3482117/101‑1 (MQ=255)


                                                                                 ggTGAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCgg              <  1:771689/101‑1 (MQ=255)


                                                                                    ggaGGGGCGGGGGGCCC.C.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGc           <  2:929802/99‑1 (MQ=255)


                                                                                    gAAGGGGCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGGGc           >  1:4200270/1‑101 (MQ=255)


                                                                                    gAAGGGGCCGGGGG.CA.A.CAC.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGGGGCGGGGc           >  2:246834/1‑101 (MQ=255)


                                                                                       ggggCGGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCggg        <  1:1553010/101‑1 (MQ=255)


                                                                                        gggCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCgggg       >  2:4103933/1‑101 (MQ=255)


                                                                                         ggCCGGGGG.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGt      >  2:3607390/1‑101 (MQ=255)


                                                                                            cGGGGG.CC.A.C.C.CCGGGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGTCt    <  1:1896773/101‑1 (MQ=255)


                                                                                            cGGGGG.CACC.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGTCTg   <  2:2886997/101‑1 (MQ=255)


                                                                                             ggggg.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGGCTgc  >  1:39049/1‑101 (MQ=255)


                                                                                             ggggg.CA.ACC.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGCGGCGGTGCGGGGTCTgc  >  2:4486910/1‑101 (MQ=255)


CTATGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCCGGGGG.CA.A.C.C.C..GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGTCTGC  >  NC_014034/1823640‑1823832

Base quality scores:


ATCG

< 3 ≤


ATCG

< 15 ≤


ATCG

< 24 ≤


ATCG

< 33 ≤


ATCG

< 40 ≤


ATCG