| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,867,833 | +C | 100% | intergenic (‑235/+80) | RCAP_rcc01729 ← / ← RCAP_rcc01730 | pyridine nucleotide‑disulfide oxidoreductase/U32 family peptidase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,867,833 | 1 | .→C | 100.0% | 42.3 | 88 | intergenic (‑235/+80) | RCAP_rcc01729/RCAP_rcc01730 | pyridine nucleotide‑disulfide oxidoreductase/U32 family peptidase |
| Reads supporting (aligned to +/- strand): new base (28/46): ref base (0/14): total (28/60) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.81e-03 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.89e-01 | ||||||||||
Only 100 of 160 total aligned reads displayed.
GAAAAGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CG.CCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCGGCCAA > NC_014034/1867733‑1867928
|
gAAAAGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCCGCCCCCGC.GGGGC.GAAAg.cg > 1:4374093/1‑101 (MQ=255)
gAAAAGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCACCCCCGGC.GGCGC.CAAAa.cg > 2:1058702/1‑101 (MQ=255)
aaaaGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.CCCCGCCCCCGC.GGCGC.GAAAg.cg.c > 1:4546400/1‑101 (MQ=255)
aaaaGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.CCCAGCCCCCGC.GGCGC.GAAAg.cg.c > 2:1679058/1‑101 (MQ=255)
aaGCCCTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.cg.ccc < 2:3056886/101‑2 (MQ=255)
aGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.CCCCGCCCCCGC.GGCGC.GAAAA.cg.cccc > 1:3230933/1‑99 (MQ=37)
cccTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAg.cg.ctcgcc < 1:2284164/99‑6 (MQ=255)
aCTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.CCCAGCCCCCCC.GGCGC.CAAAG.Cg.ccc.cccc > 2:2059460/1‑99 (MQ=37)
aCTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.CCCACCCCCCGC.GGCGC.GAAAG.Cg.ccc.cccc > 1:1965768/1‑99 (MQ=37)
cTGCTTCCCCCCCCCGGTGTCGCGAGAGCGTTGCAAAGCCCGCCCCCCCAGGCGCGCGAGGGGCCGGCC.CCCCCCCCCGGC.GGCGC.GAAAGCCC.CCG.CCAt < 2:4270436/101‑1 (MQ=12)
ttcTTTCCCCCGCCCGTGTCGCGACAGCGTTGCAAAGCCCGCACCCCCAAGCGCGCGAGGGCCCAGCG.CCCAGCCCGGGC.GGCGC.AAAAG.CGCCCG.CCATg < 2:1192849/99‑1 (MQ=25)
tccTTTCCCCCGCCCGTGTCGCGACAGCGTTGCAAAGCCCGCACCCCCAAGCGCGCGAGAGGCCAGCC.CCCAGCCCCGGC.GGCGC.GAAAGCCC.CCG.CCATg < 2:2779290/99‑1 (MQ=25)
cTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAA.CGCCCG.CCATggg > 1:2934060/1‑101 (MQ=255)
tttCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.CCCCCCCCCCGC.GGCGC.GCAAA.Cg.ccc.ccccccggcg > 1:1080668/1‑93 (MQ=25)
ccccGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATgggcgggg < 1:4650045/101‑1 (MQ=255)
ccccGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.GCCCGCCCCCGC.GGCGCGGAAAC.GG.CCC.CCCCgggcgggg > 1:2525728/1‑101 (MQ=21)
cgcccgTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGggcggggcgg < 2:4899570/101‑1 (MQ=255)
gcccgTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GGAAG.CGCCCG.CCCAGGgcggggcggg > 2:5051536/1‑101 (MQ=25)
gcccgTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAAAG.CCCAGCCCCCGC.GGCGC.GAAAG.CGCCCG.CCCAGGgcgggggggg > 1:2781908/1‑101 (MQ=21)
gcccgGGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGgcggggcggg < 2:4428134/101‑1 (MQ=255)
gtgtCGCGACAGCGTTGAAAAGACCGCATCCCCAGGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.Ct < 2:671474/101‑1 (MQ=18)
tgtCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTg < 2:246599/101‑1 (MQ=255)
tgtCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAAGG.CCCCGCCCCCGC.GGCGC.GAAAA.CGCCCG.CCACGGGCGGGGCCGggg.ccg > 2:4605384/1‑99 (MQ=18)
tgtCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.CCCAGCCCCGGC.GGGGCGGAAAC.CG.CCG.CCCAGGGCCGGGCGGggg.ccc > 2:2422043/1‑99 (MQ=25)
ggccgagACAGCGTTGCAAACACCGCACCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTg < 2:143087/95‑1 (MQ=17)
gtCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.GCCACGCCCGGC.GGGGC.GAAAA.CGCCCG.CCGGGGGAGGGGGGGGGG.GTgg > 1:2299784/1‑101 (MQ=255)
tCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGc < 2:3009565/101‑1 (MQ=255)
cgcgACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCCCGCCCCGGC..GCGC.GGAAA.CGCCCG.CCCCGGgcgggggggggggcgggc > 2:1855220/1‑93 (MQ=12)
cgcgACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCCTGGGCGGGGCGGGGG.CCgggc > 2:3596226/1‑99 (MQ=18)
cgcgACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAAAG.CCCAGCCCCCGC.GGCCC.GAAAG.CGCCCG.CCCTGGGCGGGGGGGGGG.CGGGcc > 2:3272478/1‑101 (MQ=18)
gcgACAGCGTTGCAAAGACCCCATCCCAAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCg < 2:3131633/101‑1 (MQ=18)
cgACAGCTTTCCAAAGCCCCCACCCCCAAGCGCGAGAGAGCCCAGCC.CCCAGCCCCGGG.GGCGC.GAAAGCCC.CCG.CCATGGGCGGGGCGGGCG.CTGGCCGa < 1:3166436/101‑1 (MQ=14)
cgACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCGAACG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCCTGGGCGGGGCGGGGG.CGGGCCgg > 2:2580107/1‑100 (MQ=18)
gACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCACGGGCGGGGCGGGGG.CCGGCCggg > 2:178042/1‑99 (MQ=18)
gACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAAAG.CCCCGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATCGGCGGGGCGGGCG.CCGGGCggg > 2:4138933/1‑99 (MQ=17)
cgggCGGTGCCAAGACCGTTTCCCCAGGCGCAGCAGAGGCCGGGG.CCC.GCCCCGGCGGGCGG.GACGC.GG.CCG.CCATGGGCGGGGCGGGGG.CGggggggggg > 1:1449124/4‑94 (MQ=18)
aCAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGGG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CGGGGCGC.gg > 1:4752450/1‑101 (MQ=18)
aCAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCCTGGGCGGGGCGGGGG.CGGGGCGC.gg > 2:4293896/1‑101 (MQ=18)
aCAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCC.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.gg < 2:451707/101‑1 (MQ=255)
aCAGCGTTGAAAAGACCGCACCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.gg < 1:3571973/101‑1 (MQ=17)
agggTTGCAAACCCCCCCCCCCCAGGCGCGCGAGAGGCCGGCC.CCCAGCCCCGGC.GGCGC.AAAAGCCC.CCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGc < 2:942503/98‑1 (MQ=9)
tctgcggcaggACCGCATCCCCAAGCACGGCAGAGGCCAGCG.TCCCGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCGCCGGGCCGG.GGGc > 1:4734197/11‑101 (MQ=21)
gCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCACGGGCGGGGCGGGGG.CCGGCCCA.ggggc > 1:5022/1‑99 (MQ=18)
gCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.CCCCGCCCCCGC.GGCGC.GAAAG.CGCCCG.CCCTGGGCGGGGGGGGCG.CCGGccccggggc > 1:2021896/1‑94 (MQ=17)
cGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.CCCAGCCCCGGC.GGCGC.GAAAA.CG.CCGCCCATGGGCGGGGGGGGGG.CCGGCCGG.ggggcc > 1:4301455/1‑98 (MQ=18)
ttGCAAAGACCGCATCCCAAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCttt < 2:851386/101‑1 (MQ=255)
gCAAAGCCCGCACCCCAAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTgg < 2:3913892/101‑1 (MQ=17)
gCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCC.CCCAGCCCCCGC.GGCGC.GAAAA.CGCCCG.CCATGGGCGGGGGGGGCG.GCGGCCCACGGGCCttgg > 2:3416817/1‑99 (MQ=17)
gCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACG.CCCAGCCCCGGC.GGCGC.GAAAA.CGCCCC.CCCTGGGCGGGGCGGGGG.CCGGCCGC.GGGGCCTTgg > 1:4021497/1‑101 (MQ=17)
gCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAAAG.GCCACCCCCGGC.GGGGC.GAAAA.CGCCCG.CCATGGGCGGGGCGGGGG.CGGGCCGC.GGGCCttgtg > 2:2515222/1‑98 (MQ=14)
agcccGCACCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGcc < 2:1356724/98‑1 (MQ=17)
gcccGCATCCCCAAGCGCGCGAGAGGCCGGCC.CCCAGCCCCGGC.GGCGC.GAAGG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGccc < 1:4213903/99‑1 (MQ=17)
gcccGCACCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGccc < 1:1240356/99‑1 (MQ=255)
aCCGCATCCCCAAGCGCGCGAGAGGCCAACG.CCCCGCCCCCGC.GGCGC.GAAAG.CGCCCG.CCCTGGGCGGGGCGGGGC.CCGGCCGC.GGGGCCTTGGGGgccc > 1:914988/1‑101 (MQ=9)
ccGCACCCCAAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGccccc < 2:618300/101‑1 (MQ=17)
cGCACCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCcg < 2:4543157/101‑1 (MQ=255)
ccgtCCCCAAGCGCGCGGGGGGCGGGCG.GCGAGCCCCGGC.GGCGC.GAAGG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCcgg < 2:3401403/98‑1 (MQ=14)
ccacccccAGGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCcgg < 1:87440/97‑1 (MQ=17)
cATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGGG.CTGGCCGA.GGGCCCTTGGGGGCCCccgc > 1:2840026/1‑101 (MQ=17)
ccccAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAA.AGCCCG.CCGTCGGCGGGGCGGGCGCCGGGCCGG.GGGCGTTTTGGG.CCCcggcggg > 1:1267268/1‑100 (MQ=2)
cacgcgcgcGAGAGCCCAGCG.CCCAGCCCCGGG.GGCGC.GAAGG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAg < 1:3637388/98‑1 (MQ=17)
aaGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGG.GGGCCCTTGGGGccccccgggggccgg > 1:600910/1‑91 (MQ=17)
gcgcgcGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAgggg < 2:4777919/101‑1 (MQ=255)
tccgatctagGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAggggg < 2:4377322/93‑1 (MQ=17)
cgcgAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGAt < 2:3051123/101‑1 (MQ=255)
cgcgAGAGGCCAGCC.CCCCGCCCCGGC.GGCGC.GAAAGCCC.CCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGAt < 1:70717/101‑1 (MQ=14)
cccgAGGGCCCGGCC.CCCGGCCCCGGC.GGCGG.AAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGAt < 1:3932548/99‑1 (MQ=14)
gcgAGGGCCCAGCC.CCCAGCCCCGGC.GGCGC.GAAGGCCC.CCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATc < 1:2059608/101‑1 (MQ=17)
gcgAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CCGGGCGA.GGGGCTTTGGGGGCCCCGGGGGGCCgggggggc > 2:4991532/1‑98 (MQ=14)
ggagaGGCCAGCC.CCCAGCCCGGGG.GGCGC.GAAGG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCt < 1:735645/100‑1 (MQ=17)
cgAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCCTTGGGGCCCCCGGCGGGCAGGGGGGTCt > 2:1372610/1‑101 (MQ=14)
gagaGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCCTGGGCGGGGCGGGCG.CTGGCCGC.GGGCCTTTGGGGCCCCCGGCGGGCAGGGGGGTCTg > 1:4200571/1‑101 (MQ=17)
ggggCCGGCG.CCCGGCCCGGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGtt < 2:1876301/99‑1 (MQ=17)
gagGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGGCTTTGGGGCCCCCGGCGGGCAGGGGGGGCTGtt > 1:1015198/1‑101 (MQ=17)
gagGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGtt < 1:2515236/101‑1 (MQ=255)
agGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAgggggggatcgga > 1:4377639/1‑93 (MQ=14)
agGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGGTCTGTTg > 2:550014/1‑101 (MQ=255)
agGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTg > 2:1134659/1‑101 (MQ=255)
ggCCAGCC.CCCGGCCCCGGC.GGCGC.GAAGG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTgc < 2:2781706/101‑1 (MQ=17)
gCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTgcg > 2:798255/1‑101 (MQ=255)
ccAGCC.CCCCGCCCGGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTgcgc < 1:4977916/101‑1 (MQ=17)
ccAGCC.CCCAGCCCCGGC.GGCGC.GAAAGCCC.CCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTgcgc < 2:1641295/101‑1 (MQ=18)
cggcccccccccccGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCa < 2:1495926/91‑1 (MQ=17)
cgcg.cCCGGCCCCGGC.GGCGC.GAAAGCCC.CCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCAt < 2:3669236/100‑1 (MQ=18)
gcccccACCCCCGGC.GGCGC.GAAAGCCC.CCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATg < 2:2388402/98‑1 (MQ=18)
g.cCCAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGGTCTGTTGCGCATGGc > 1:4031313/1‑101 (MQ=255)
cccAGCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGGTCTGTTGCGCATGGcc > 2:4373538/1‑101 (MQ=255)
ccAGCCCGGGG.GGGGC.GAAGC.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCcg < 1:1757170/101‑1 (MQ=18)
gCCCGGGG.GGCGC.GAACG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGt < 1:35887/101‑1 (MQ=18)
gCCCCGGC.GGCGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGTCCTTTGGGGCCCCCGGCGGTCCGGGGGCTCTGTTGCGCATGGCCGCGt > 1:4600496/1‑101 (MQ=18)
ccccGGC.GGCGC.GAAGGCCC.CCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTc < 2:4096455/101‑1 (MQ=18)
cgggggggcgC.GAAGG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCa < 1:3408281/95‑1 (MQ=18)
ggc.ggcGC.GAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAgcg > 2:2862945/1‑101 (MQ=255)
gAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCgggc > 2:280947/1‑99 (MQ=255)
gAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCGGcc < 1:1668530/101‑1 (MQ=255)
gAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCGGcc > 1:3810531/1‑101 (MQ=255)
gAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCGGcc > 1:630929/1‑101 (MQ=255)
gAAAG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCGGcc > 2:3323375/1‑101 (MQ=255)
aaggggg.ccg.ccATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCGGCCa < 1:4739925/95‑1 (MQ=255)
aaaG.CGCCCG.CCATGGGCGGGGCGGGCG.CTGGCCCA.GGGCCTTTGGGGCCCCCGGCGGGCAGGGGGATCTGTTGGGCATGGCCGCGTCCGCGCCGCGGCCa > 1:888866/1‑101 (MQ=21)
|
GAAAAGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCG.CCCAGCCCCGGC.GGCGC.GAAAG.CG.CCG.CCATGGGCGGGGCGGGCG.CTGGCCGA.GGGCCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCGGCCAA > NC_014034/1867733‑1867928
Base quality scores:
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 20 ≤
ATCG
< 32 ≤
ATCG
< 41 ≤
ATCG
|