| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,060 | +A | 3.4% | intergenic (+108/‑134) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,060 | 2 | .→A | 3.4% | 12.6 ‑0.4 ‑1.7 | 147 | intergenic (+108/‑134) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (4/1): ref base (84/58): total (88/59) | ||||||||||
| Fisher's exact test strand distribution p-value = 6.48e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.89e-02 | ||||||||||
Only 100 of 160 total aligned reads displayed.
CGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.AG.CAGA.AGGGGGGCAAGCG.C.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493960‑2494152
|
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..g > 1:944133/1‑101 (MQ=255)
ccTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..g < 1:1388401/100‑1 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aag > 1:4935839/1‑99 (MQ=255)
ccccccCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aag < 2:295632/100‑3 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagcc < 2:1958789/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagcc < 1:2236576/101‑5 (MQ=255)
cccccCGTCCGCAAGCGGCCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagc < 2:3354399/101‑4 (MQ=21)
cccccCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagc < 1:779015/101‑4 (MQ=255)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagcca > 2:1580692/1‑96 (MQ=255)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAAAATCCC.GGGGGGTGAA.TGGC..G.aagccag > 1:2081755/5‑95 (MQ=21)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGCAATATCCC.GGGGGGCGAA.TGGC..G.aagccagagg > 2:4054418/2‑92 (MQ=18)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagccagagg > 2:4627169/2‑92 (MQ=255)
tCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagccagaggg < 1:1113887/101‑11 (MQ=255)
aGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGCag < 2:1010559/101‑2 (MQ=18)
aGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGCag < 2:2294015/101‑2 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGCagc < 2:2245006/101‑3 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGATATATCCC.GGGGGGCGAA.TGGC..GAAG.CCAG.AGGGGGGCagcg > 2:5013465/1‑98 (MQ=17)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGCagcg > 2:234936/1‑98 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GTGGGGGGAA.TGGC..GAAG.CCAG.AGGGGGGCagcgc > 1:4296424/1‑97 (MQ=17)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGCagcgc > 2:305709/1‑97 (MQ=17)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGCagcgc > 1:4959002/1‑97 (MQ=17)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.c.c > 1:2912258/1‑101 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.c.c > 1:1954739/1‑101 (MQ=17)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.c.c > 1:1658484/1‑101 (MQ=17)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.c.c.c > 2:380330/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGTTGAAACCGGATGCCCTTCATCTTGCCCGAAATATCCC.GGGGGGTGAG.TCGC..GAAG.CCAC.AGGGGGGC.AGCG.c.c.cc > 2:1792817/1‑101 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.c.c.cccc < 2:4222518/101‑2 (MQ=17)
cccccGGAATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCG.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.c.c.cccct < 2:4240711/101‑3 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCCTCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGccc > 1:1996975/1‑101 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC..AGGGGTGAATTGGCCAA.AG.GCCA.AGAGGGGGCAGCG.C.C.CCC.TGCCCcg > 1:414303/1‑101 (MQ=2)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC..AGGGGTGAATTGGCCAA.AG.GCCA.AGAGGGGGCAGCG.C.C.CCC.TGCCCcgc > 1:1106325/1‑100 (MQ=2)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.AA.GCCA.GAGGGGGCCAGCGCC.C.CCC.TGCCCcgg > 1:1500262/1‑101 (MQ=18)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGCGAA.TGGC..GAAG.CCAG.AGGGGGGCAGCGG.C.C.CCC.TGCCCcgg > 2:3780334/1‑101 (MQ=17)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC..AGGGGTGAATTGGCCAA.AG.GCCA.AGAGGGGGCAGCG.C.C.CCC.TGCCCcgcc > 2:190218/1‑99 (MQ=2)
atatTTGCAGGAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.GGGC..GAAG.CCAG.AGGGGGGCCGGGC.C.C.CCC.TGCCCcgcc > 1:1654281/1‑99 (MQ=17)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGCGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCcggc > 1:1947906/1‑101 (MQ=17)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCcggcg > 1:2956470/1‑101 (MQ=17)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCcggcg > 2:4221845/1‑101 (MQ=18)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTcc > 1:3887436/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTcc > 1:3037526/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGGcc > 1:3779656/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGCcc > 1:3021628/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGG.GAGCG.C.CGCCC.TGCCCCGGCGGTcc > 2:1902392/1‑101 (MQ=18)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCg < 1:3262542/101‑1 (MQ=17)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCg < 1:67356/101‑1 (MQ=17)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCcggcggggcgt > 2:4463382/1‑96 (MQ=17)
gcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGGGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTgg > 1:4272173/1‑101 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTggc < 2:256841/101‑1 (MQ=17)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGGGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCCGCGGTCCGTggcgg > 2:3144664/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCt < 2:5000912/101‑1 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGGGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCt > 1:3099186/1‑101 (MQ=18)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCtt < 2:2912032/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTg < 2:3904594/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTg > 2:3661741/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTg < 1:1317686/101‑1 (MQ=17)
cGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGAc > 1:4841375/1‑101 (MQ=17)
ggATGCTTTTTATCTTGGCCGAAATATCCG.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGAcg < 1:4727194/101‑1 (MQ=12)
ggATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGAcg < 2:3017367/101‑1 (MQ=17)
gATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGAcgg > 1:4469323/1‑101 (MQ=18)
gATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGAGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCA.CAC.CCC.TGCCCCGGCGGTCCGTGGCGGGG.CCCTGAcgg > 1:836473/1‑101 (MQ=12)
tGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGT.GCGGCG.CCTTGAcgggcg > 2:218413/1‑101 (MQ=17)
cTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGAcgggcggg > 2:416665/1‑101 (MQ=18)
tttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCgggg > 2:1200603/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCggggg > 2:76190/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCggggg > 2:2277111/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGG.AAGCGCC.C.CCC.TGCCCCGGCGGGCCGCGGCGGCG.CCTTGCGGGGCggggg > 2:1531078/1‑101 (MQ=9)
cATCTTGCCCGAAATATCCC.GGGGGGAGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGgcg > 1:531678/1‑101 (MQ=18)
cTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCgg < 2:4405102/101‑1 (MQ=18)
cTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCgg > 1:3428738/1‑101 (MQ=18)
tGCCCGAAATATCCCGGGGGGGGGAA.TGGG..G.AA.CCAA.GGGGGGGGAAGGG.C.C.CCCTTGCCCCGCCGGCCCG.GGCGGGGCCCTTGACGGGGGGGGGGGGggg > 1:2060910/1‑101 (MQ=255)
tGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGc < 2:1954602/101‑1 (MQ=18)
gCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.AA.GCCA.GAGGGGGCCAGCGCC.C.CCC.TCCCCCGGCGGTCCGTGGCGGCG.CCTTCACCTGGGGGGGCGCggggc > 2:621723/1‑99 (MQ=9)
gccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAt > 2:2132524/2‑101 (MQ=18)
cccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAt < 1:2606143/101‑1 (MQ=18)
ccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAtt > 2:3021597/1‑101 (MQ=18)
ccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAtt > 2:2835915/1‑101 (MQ=18)
ccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAtt < 1:2861406/101‑1 (MQ=18)
cGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTa < 2:2942581/101‑1 (MQ=18)
cGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTGGACGGGCGGGGGCGCgggactga > 2:3170134/1‑96 (MQ=17)
gAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTaa < 1:2443983/101‑1 (MQ=18)
aaaTATCCC.GTGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGGGCGGGCATTAAc > 1:3450778/1‑101 (MQ=18)
aaaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGGCGGGCGGGGGCGCGGGCATTAAc < 2:1701948/101‑1 (MQ=18)
aaaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAAc > 2:2218909/1‑101 (MQ=18)
aaaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCCCGGGGATTAAc > 2:1249508/1‑101 (MQ=18)
aaaTATCCC.GGGGGGAGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGAGGTCCGTGGCGGCG.CCTTGACGGGCGGAGGCGCGGGCATTAAc > 2:590399/1‑101 (MQ=18)
aaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGG.AAGAGCC.C.CCC.TGCCCCGGCGGACAGCGGCGGAG.ACTTGACGGGGGGGGGCCCGGGCGTCAAcc > 1:4022190/1‑101 (MQ=2)
atatCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCg < 2:1658355/101‑1 (MQ=21)
atatCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCg > 2:4307076/1‑101 (MQ=21)
tatCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGa > 1:4144164/1‑101 (MQ=21)
atCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGG.AGCCC.C.C.CCC.TGCCCCGGCGGGCCGGTGGGGCG.CCTTGGCCGGGGGGGGGGGGGGGATTTACCCaaa > 1:3547767/1‑101 (MQ=2)
agccc.GGGGGGGGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGaa < 1:305762/99‑1 (MQ=21)
tCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:4718866/101‑1 (MQ=21)
tCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 2:333362/101‑1 (MQ=21)
tCCC.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa > 1:3623977/1‑101 (MQ=21)
ccc.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAt < 2:3722167/101‑1 (MQ=21)
ccc.GGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAt < 1:234970/101‑1 (MQ=21)
ggggTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCaa < 2:3452673/101‑1 (MQ=25)
gggTGAA.TGGC..GAAGCCAG..AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc > 2:2360260/1‑101 (MQ=25)
gggTGAA.TGGC..G.AG.CGCAGAGGGGGACGAGGC.C.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc < 2:4913768/101‑1 (MQ=255)
gTGAA.TGGC..GAAGCCAG..AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGGCCGTGGGGGCG.CCTTGACGGGCGGGGGCGGGGGGCTTAACCGAAATTGCAACAg > 1:2681094/1‑101 (MQ=16)
|
CGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.AG.CAGA.AGGGGGGCAAGCG.C.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493960‑2494152
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|