| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,080 | +C | 92.9% | intergenic (+128/‑114) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,080 | 1 | .→C | 92.9% | 23.2 ‑0.7 ‑1.3 | 141 | intergenic (+128/‑114) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (74/57): ref base (7/3): total (81/60) | ||||||||||
| Fisher's exact test strand distribution p-value = 5.17e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.00e-02 | ||||||||||
Only 100 of 165 total aligned reads displayed.
GACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.C.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGCCCA > NC_014034/2493982‑2494170
|
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c > 1:1658484/1‑101 (MQ=17)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c.c > 2:380330/1‑101 (MQ=18)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c.cccc < 2:4222518/101‑2 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCCTCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGccc > 1:1996975/1‑101 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGccc < 2:1778835/101‑1 (MQ=17)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcg < 1:1580824/101‑1 (MQ=17)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcg > 1:4557965/1‑101 (MQ=17)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.C.CCCTGCCCcgc > 1:1106325/1‑100 (MQ=2)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGCAGCGG.C.C.CCCTGCCCcgg > 2:3780334/1‑101 (MQ=17)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.C.CCCTGCCCcgcc > 2:190218/1‑99 (MQ=2)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcggcg > 2:4221845/1‑101 (MQ=18)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcggcg > 1:2956470/1‑101 (MQ=17)
atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcggcgg > 2:715411/1‑101 (MQ=18)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGt < 2:1530092/101‑1 (MQ=17)
ttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTc < 1:1445728/101‑1 (MQ=17)
ttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTc > 1:3754824/1‑101 (MQ=18)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTcc > 1:3887436/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTcc > 2:1798383/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTcc > 1:3037526/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGGcc > 1:3779656/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGCcc > 1:3021628/1‑101 (MQ=17)
tGCACNNAGATGCAACCGGATTCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTcc < 1:1976333/101‑1 (MQ=14)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCg < 1:3262542/101‑1 (MQ=17)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCg < 1:67356/101‑1 (MQ=17)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcggcggggcgt > 2:4463382/1‑96 (MQ=17)
gcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTgg > 1:4272173/1‑101 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCCGAGGGGGGC.AGCGCC.C.CCCTCCCCCAGCCGTCCCTggc > 2:887342/1‑101 (MQ=9)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTggc < 2:256841/101‑1 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCt < 2:5000912/101‑1 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCt > 1:3099186/1‑101 (MQ=18)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCtt < 2:2912032/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 2:3904594/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 1:4969488/101‑1 (MQ=17)
ccGGATGCCTTTCATCTTCCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGa < 2:1609947/101‑1 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg < 2:3017367/101‑1 (MQ=17)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgg > 1:4469323/1‑101 (MQ=18)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGAGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCA.CAC.CCCTGCCCCGGCGGTCCGTGGCGGGGCCCTGAcgg > 1:836473/1‑101 (MQ=12)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 2:416665/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg > 2:3039833/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg > 2:76190/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACCGGCggggg > 2:2228155/1‑101 (MQ=17)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.CGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg > 2:1903303/1‑101 (MQ=18)
tCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTCCCCCGGCGGTCCGTGGCGGCGCCTTGACCGGGgggggg > 2:1239428/1‑100 (MQ=9)
cATCTTGCCCGAAATATCCCGGGGGGAGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcg > 1:531678/1‑101 (MQ=18)
aTCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcgg > 1:2168370/1‑100 (MQ=18)
aTCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcgc > 2:3072130/1‑101 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg > 2:364132/1‑101 (MQ=18)
cTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCgg > 1:3428738/1‑101 (MQ=18)
cTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCgg < 2:4405102/101‑1 (MQ=18)
gccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt > 2:2132524/2‑101 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt < 1:2606143/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt > 2:2835915/1‑101 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 1:2861406/101‑1 (MQ=18)
cgcaaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTa < 2:4256508/98‑1 (MQ=18)
cGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTa < 2:2942581/101‑1 (MQ=18)
cGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTGGACGGGCGGGGGCGCgggactga > 2:3170134/1‑96 (MQ=17)
gAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 1:2443983/101‑1 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc > 2:2218909/1‑101 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCCCGGGGATTAAc > 2:1249508/1‑101 (MQ=18)
aaaTATCCCGGGGGGAGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGAGGTCCGTGGCGGCGCCTTGACGGGCGGAGGCGCGGGCATTAAc > 2:590399/1‑101 (MQ=18)
atatCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGTGGGCATTAACCg < 1:2733563/101‑1 (MQ=18)
atatCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg < 2:1658355/101‑1 (MQ=21)
tatCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGa > 1:4144164/1‑101 (MQ=21)
agcccGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaa < 1:305762/99‑1 (MQ=21)
tCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa > 1:3623977/1‑101 (MQ=21)
tCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:4718866/101‑1 (MQ=21)
tCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 2:333362/101‑1 (MQ=21)
cccGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAt < 1:234970/101‑1 (MQ=21)
cccGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAt < 2:3722167/101‑1 (MQ=21)
ccGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt < 1:1143981/101‑1 (MQ=21)
cGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.CAC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGGGGGGGCGCGGGCGTTAACCGAAATTg > 2:298908/1‑101 (MQ=21)
ggggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc < 1:4782575/101‑1 (MQ=25)
gggTGAA.TGGC..GAAGCCAG.AGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc > 2:2360260/1‑101 (MQ=25)
tGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGa < 1:4054721/101‑1 (MQ=25)
cgaagccagaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCg > 1:1721105/10‑101 (MQ=38)
cgaagccagaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCg < 1:826876/92‑1 (MQ=38)
cgaagccagaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCg > 1:2147444/10‑101 (MQ=38)
gaagccagaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGa > 1:648424/9‑101 (MQ=38)
aagccagaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACCGATGCTGCGAt > 2:4875272/8‑101 (MQ=38)
aagccagaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGAt > 2:3439191/8‑101 (MQ=38)
agccagaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATc < 2:4872508/95‑1 (MQ=38)
agccagaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATc < 1:242318/95‑1 (MQ=38)
gccagaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATcc > 2:3891015/6‑101 (MQ=38)
ccagaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCt > 2:2167036/5‑101 (MQ=38)
cagaGGGGGGCATCGC.C.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTc < 2:2803191/98‑1 (MQ=255)
cagaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTc < 1:1950882/98‑1 (MQ=38)
cagaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTc > 1:2023539/4‑101 (MQ=38)
agaGGGGGGC.AGCT.C.CGCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCCATCCTCg < 1:3380103/99‑1 (MQ=255)
agaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTcc > 2:546995/3‑100 (MQ=38)
agaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCg > 1:1358706/3‑101 (MQ=39)
agaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCg < 1:3934133/99‑1 (MQ=39)
agaGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCg > 2:1177990/3‑101 (MQ=39)
aGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGcc > 2:2362783/1‑101 (MQ=255)
aGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCAcc > 2:4971476/1‑101 (MQ=255)
ggggggC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGccc < 2:3372314/101‑1 (MQ=255)
ggggggC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGccc < 1:96249/101‑1 (MQ=255)
ggggggC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTCGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGccc < 1:3498171/101‑1 (MQ=255)
gggggC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGGGGGCATTAACCGAAATTGCAACAGAAGCTGCGAACCCCCCCCa > 2:3510705/1‑101 (MQ=255)
gggggC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGCCCa < 2:4385702/101‑1 (MQ=255)
gggggC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGCCCa < 2:2147296/101‑1 (MQ=255)
|
GACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.C.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGCCCA > NC_014034/2493982‑2494170
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|