New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1054961 =	263 (1.070)	3 (0.010)	2/200	29.7	0.01	coding (1152/1185 nt)	RCAP_rcc00960	IS111A/IS1328/IS1533 family transposase/IS116/IS110/IS902 family transposase
	?	NC_014034	3049962 =	252 (1.030)					coding (2942/3477 nt)	RCAP_rcc02857	diguanylate cyclase/phosphodiesterase
Rejected: Position hash score below cutoff.

GCAGAGGCAGTCGGAGCGCGTCAGGATTTGCGGTCAGGTAAAAATTTTCGTCCGAAAGCTGTTCAACGTCCGTCCGGAAGCTGATCGCGCGCTACA...........................................................................  <  NC_014034/1055056‑1054961 ................................................................................................CCTTCTGGCGCGAGCGCGGGCTGATCGTGCCGAAGATCAGCTTCAACGTCTCCTCGGGGCGGATGCACGATCCCG  >  NC_014034/3049962‑3050036                                                                                                                                                                             GCAGAGGCAGTCGGAGCGCGTCAGGATTTGCGGTCAGGTAAAAATTTTCGTCCGAAAGCTGTTCAACGTCCGTCCGGAAGCTGATCGCGCGCTACACgagc                                                                        <  1:3333326/101‑5 (MQ=1)                                 GTCAGGTAAAAATTTTCGTCCGAAAGCTGTTCAACGTCCGTCCGGAAGCTGATCGCGCGCTACACCTTCTGGCGCGAGCGCGGGCTGATCGTGCCGAAGAT                                        >  2:2013078/1‑101 (MQ=255)                                                                       CGTCCGGAAGCTGATCGCGCGCTACACCTTCTGGCGCGAGCGCGGGCTGATCGTGCCGAAGATCAGCTTCAACGTCTCCTCGGGGCGGATGCACGATCCCG  <  1:2013222/101‑1 (MQ=255)                                                                                                                                                                             GCAGAGGCAGTCGGAGCGCGTCAGGATTTGCGGTCAGGTAAAAATTTTCGTCCGAAAGCTGTTCAACGTCCGTCCGGAAGCTGATCGCGCGCTACA...........................................................................  <  NC_014034/1055056‑1054961 ................................................................................................CCTTCTGGCGCGAGCGCGGGCTGATCGTGCCGAAGATCAGCTTCAACGTCTCCTCGGGGCGGATGCACGATCCCG  >  NC_014034/3049962‑3050036 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG