New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1071918297 (1.210)2 (0.010) 2/200 29.7 0.01 intergenic (‑114/+154) RCAP_rcc00979/RCAP_rcc00980 hypothetical protein/phage virion morphogenesis protein
?NC_014034 = 3701760 237 (0.970)coding (2352/2640 nt) mutS DNA mismatch repair protein MutS
Rejected: Position hash score below cutoff.

GGCCCGAATGCAAAACCCCCGGACACAGGTCCGGGGGCATCGCGTGGTGGCCTCTTGGTCAGATCATAGGCGCGGCGAC........................  >  NC_014034/1071840‑1071918
...............................................................................CCGGTCCTATGGCGTGCAGGTGGC  <  NC_014034/3701760‑3701737
                                                                                                       
GGCCCGAATGCAAAACCCCCGGACACAGGTCCGGGGGCATCGCGTGGTGGCCTCTTGGTCAGATCATAGGCGCGGCGA.CCGGTCCTATGGCGTGCAGGTGG   >  1:2965764/1‑101 (MQ=255)
 GCCCGAATGCAAAACCCCCGGACACAGGTCCGGGGGCATCGCGTGGTGGCCTCTTGGTCAGATCATAGGCGCGGCGA.CCGGTCCTATGGCGTGCAGGTGGC  <  2:2965536/101‑1 (MQ=255)
                                                                                                       
GGCCCGAATGCAAAACCCCCGGACACAGGTCCGGGGGCATCGCGTGGTGGCCTCTTGGTCAGATCATAGGCGCGGCGAC........................  >  NC_014034/1071840‑1071918
...............................................................................CCGGTCCTATGGCGTGCAGGTGGC  <  NC_014034/3701760‑3701737

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG