New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1103354 =	137 (0.630)	11 (0.050)	9/178	22.2	0.10	intergenic (‑354/+64)	ugpB/regA2	sn‑glycerol‑3‑phosphate‑binding periplasmic protein ugpB/photosynthetic apparatus regulatory protein RegA
	?	NC_014034	2330307 =	61 (0.250)					intergenic (+282/+30)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

AGGCGGCGGGCGAAGACCTGGGCGGCATGATCGATTTCGAGGACTGATCCCCGGCCCCCGTTTTTTCTTGGCCCAAATACGCCGGGGGTCCGGGGGCGGAGCCCCCGGCGG....................................................................................................  <  NC_014034/1103464‑1103354 ....................................................................................................GCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGTC  >  NC_014034/2330307‑2330406                                                                                                                                                                                                                                                                                            gCCAAAGACCCCGGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCG                                         <  1:1618085/100‑1 (MQ=2)                                                                                    GGGGGCCGGGGGGCGGACCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTC                             <  2:4920317/101‑1 (MQ=0)                                                                                      gggccgGGGGGCGGAGCCCACGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTT                           <  2:3774579/95‑1 (MQ=0)                                                                                      GGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTT                           <  2:1365710/101‑1 (MQ=1)                                                                                           CGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGA                      <  1:4970217/101‑1 (MQ=1)                                                                                            GGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGAT                     <  2:2964880/101‑1 (MQ=1)                                                                                                GCGGACCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACC                 <  2:2833715/101‑1 (MQ=1)                                                                                                 CGGAGCCCCCGGCGGGGCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGGCGCCTTCTTCGGGGTCACCC                >  2:2994880/1‑101 (MQ=0)                                                                                                  GGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCG               <  1:4553362/101‑1 (MQ=1)                                                                                                  GGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCCTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCG               >  2:2604041/1‑101 (MQ=1)                                                                                                   GAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAAAACGCCCGCGGGCAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCcc              >  2:3319072/1‑99 (MQ=0)                                                                                                                                                                                                                     AGGCGGCGGGCGAAGACCTGGGCGGCATGATCGATTTCGAGGACTGATCCCCGGCCCCCGTTTTTTCTTGGCCCAAATACGCCGGGGGTCCGGGGGCGGAGCCCCCGGCGG....................................................................................................  <  NC_014034/1103464‑1103354 ....................................................................................................GCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGTC  >  NC_014034/2330307‑2330406 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 29 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG