New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1303934 =	111 (0.480)	53 (0.230)	17/190	18.6	0.22	intergenic (+121/+36)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
	?	NC_014034	2578420 =	256 (1.050)					intergenic (+29/+141)	purU/pgi	formyltetrahydrofolate deformylase/glucose‑6‑phosphate isomerase
Rejected: Position hash score below cutoff.

CTCGGCGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGG......................................................................................................  <  NC_014034/1304038‑1303934 ....................................................................................................GGGGGCGCTGCCCCCCT.CTT.GCCTTCGGCAATTCACCCCCCGGGATATTTGCGGCAAGATGAATGAGAAGCCCCGATCGTGCTTTATCTTGCCGAAAATATCCCG  >  NC_014034/2578420‑2578519                                                                                                                                                                                                                      CGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGC                                                                                                       <  2:3789819/101‑1 (MQ=1)       GCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCG                                                                                                      >  2:4446782/1‑101 (MQ=1)       GCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCG                                                                                                      <  2:3669653/101‑1 (MQ=1)         GCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCg                                                                                                    >  1:3564756/1‑100 (MQ=1)         GCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCT                                                                                                    <  2:1122666/101‑1 (MQ=1)          tTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG                                                                                                   <  1:2671149/100‑1 (MQ=1)           TTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGC                                                                                                  >  1:3471294/1‑101 (MQ=1)           TTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGC                                                                                                  >  2:2503434/1‑101 (MQ=1)            TTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCC                                                                                                 >  1:2709661/1‑101 (MQ=1)            TTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAAGGGGCGCTGCC                                                                                                 >  1:1051591/1‑101 (MQ=1)               TGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCC                                                                                              <  2:4276470/101‑1 (MQ=1)               TGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCC                                                                                              >  1:4467383/1‑101 (MQ=1)                gcgtgaAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCC                                                                                             <  2:3744130/95‑1 (MQ=0)                GCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCC                                                                                             <  1:3721483/101‑1 (MQ=1)                GCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCC                                                                                             >  2:1875397/1‑101 (MQ=1)                GCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCC                                                                                             >  1:3984873/1‑101 (MQ=1)                GCGTTAAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCC                                                                                             <  2:1034421/101‑1 (MQ=1)                 CGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTTCCCCCCT                                                                                            >  2:4440697/1‑101 (MQ=1)                   TTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CT                                                                                         <  2:4089295/101‑1 (MQ=1)                   TTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CT                                                                                         <  2:1311440/101‑1 (MQ=1)                    taAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT                                                                                        <  1:3833328/99‑1 (MQ=1)                    TCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT                                                                                        >  2:1890578/1‑101 (MQ=1)                    TCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT                                                                                        >  2:1850272/1‑101 (MQ=1)                    TCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT                                                                                        <  1:2159177/101‑1 (MQ=1)                    TCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT                                                                                        <  1:1736385/101‑1 (MQ=1)                     CAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT.G                                                                                      >  2:2645370/1‑101 (MQ=1)                      AAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGGGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTCCCCCCCC.CTT.Gg                                                                                     >  1:4895154/1‑100 (MQ=0)                       AGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT.Ggc                                                                                    >  1:3012022/1‑99 (MQ=1)                       AGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT.Ggc                                                                                    <  1:2842171/101‑3 (MQ=1)                       AGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT.Ggc                                                                                    <  2:3070244/101‑3 (MQ=1)                       AGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CCT.Ggc                                                                                    >  2:4013960/1‑99 (MQ=11)                         CCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCCGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT.Ggcct                                                                                  >  1:4002631/1‑97 (MQ=1)                          CGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT.Ggcctt                                                                                 <  1:3958920/101‑6 (MQ=11)                          CGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT.Ggcctt                                                                                 <  1:207347/101‑6 (MQ=11)                          CGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTT.Ggcctt                                                                                 <  2:2771679/101‑6 (MQ=11)                           GGTGCGCAAGACCCTGATGCGGGCTGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTC                                                                                 <  1:1983339/101‑1 (MQ=14)                           GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTC                                                                                 <  2:3991403/101‑1 (MQ=31)                           GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTC                                                                                 <  1:2056675/101‑1 (MQ=31)                           GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTC                                                                                 >  2:2456729/1‑101 (MQ=31)                           GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTC                                                                                 <  2:4864767/101‑1 (MQ=31)                             TGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTCGG                                                                               <  2:2231167/101‑1 (MQ=32)                             TGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTCGG                                                                               <  2:1058582/101‑1 (MQ=32)                              GCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTCGGC                                                                              <  2:3984571/101‑1 (MQ=32)                              GCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTCGGC                                                                              >  2:3495847/1‑101 (MQ=32)                              GCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTCGGC                                                                              <  2:2104227/101‑1 (MQ=32)                               CGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCCTG.GCCTTCGGCc                                                                             <  1:2731027/101‑2 (MQ=17)                                GCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTCGGCca                                                                            >  1:2100518/1‑99 (MQ=32)                                GCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTCGGCca                                                                            <  2:4705546/101‑3 (MQ=32)                                 CAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTCGGCcaa                                                                           >  2:2359088/1‑98 (MQ=32)                                  AAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTCGGCcaat                                                                          <  2:1051481/101‑5 (MQ=14)                                   AGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTCGGCcaatt                                                                         <  2:3363881/101‑6 (MQ=11)                                   AGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTCGGCcaatt                                                                         <  2:4616971/101‑6 (MQ=11)                                   AGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT.CTTGGCCTTCGGCcaatt                                                                         >  2:535899/1‑96 (MQ=11)                                                                                                                                                                                                                 CTCGGCGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGG......................................................................................................  <  NC_014034/1304038‑1303934 ....................................................................................................GGGGGCGCTGCCCCCCT.CTT.GCCTTCGGCAATTCACCCCCCGGGATATTTGCGGCAAGATGAATGAGAAGCCCCGATCGTGCTTTATCTTGCCGAAAATATCCCG  >  NC_014034/2578420‑2578519 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG