New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1304756 =164 (0.730)3 (0.010) 3/184 27.5 0.02 coding (429/1215 nt) RCAP_rcc01231 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
?NC_014034 = 3159974 210 (0.860)coding (954/1419 nt) atpD ATP synthase F1 subunit beta
Rejected: Position hash score below cutoff.

CCGACATCTCGGACGAGCCCTTCGGCTGGAACTTTCCGAACTGGCTTCTGCGCCGGGAAATGGTGGCGCGTCTGACCGAGATCCCGCTCGTCGATTTCCGCCCCGGC....................................................................................................  <  NC_014034/1304862‑1304756
...................................................................................................GCCCCGGCCACGTCCTTTGCCCACCTCGACGCCACGACCGTTCTGTCGCGTGCGATCTCGGAACTCGGGATCTACCCGGCCGTCGACCCGCTCGACTCCACCTCGCGG  <  NC_014034/3159974‑3159875
                                                                                                                                                                                                               
           GACGAGCCCTTCGGCTGGAACTTTCCGAACTGGCTTCTGCGCCGGGAAATGGTGGCGCGTCTGACCGAGATCCCGCTCGTCGATTTCCGCCCCGGCCgggg                                                                                                 >  2:3808094/1‑97 (MQ=255)
                                             TTCTGCGCCGGGAAATGGTGGCGCGTCTGACCGAGATCCCGCTCGTCGATTTCCGCCCCGGCCACGTCCTTTGCCCACCTCGACGCCACCACCGTTCTCTC                                                               >  2:1044762/1‑101 (MQ=255)
                                                            TGGTGGCGCGTCTGACCGAGATCCCGCTCGTCGATTTCCGCCCCGGCCACGTCCTTTGCCCCCCTCGACGCCACGACCGTTCTGTCGCGTGCGATCTCGGA                                                <  1:1044872/101‑1 (MQ=255)
                                                                                                                                                                                                               
CCGACATCTCGGACGAGCCCTTCGGCTGGAACTTTCCGAACTGGCTTCTGCGCCGGGAAATGGTGGCGCGTCTGACCGAGATCCCGCTCGTCGATTTCCGCCCCGGC....................................................................................................  <  NC_014034/1304862‑1304756
...................................................................................................GCCCCGGCCACGTCCTTTGCCCACCTCGACGCCACGACCGTTCTGTCGCGTGCGATCTCGGAACTCGGGATCTACCCGGCCGTCGACCCGCTCGACTCCACCTCGCGG  <  NC_014034/3159974‑3159875

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 40 ≤  ATCG