New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1328848 =272 (1.190)2 (0.010) 2/186 28.7 0.01 coding (1291/1299 nt) RCAP_rcc01254 phage integrase
?NC_014034 2550162 = 168 (0.690)coding (1104/1206 nt) RCAP_rcc02379 CobW/HypB/UreG family cobalamin biosynthesis protein
Rejected: Position hash score below cutoff.

GCAAGGCGAACGACGACCTGCTGTCCAGAGCCCGCAGGCTGGCGGCGACGCATCGCCGTGGCCCGCCCGGTGTCGTGTCGTTCTGGTTGGTGGCGGCCTAGATCGC....................................................................................................  <  NC_014034/1328953‑1328848
...................................................................................................AGATCGCGTCGCGGTCCAGATCGACGCCGATGAAGACGATCTCCTGGCGCCGGTCGCCCCAGGGCTCGGCCCAGTTCCGGGCGATTTCGCGCTGCGCATCGGGATGC  >  NC_014034/2550162‑2550261
                                                                                                                                                                                                              
                                                                           TGTCGTTCTGGTTGGTGGCGGCCTAGATCGCGTCGCGGTCCAGATCGACGCCGATGAAGACGATCTCCTGGCGCCGGTCGCCCCAGGGCTCGGCCCAGTTC                                >  2:137383/1‑101 (MQ=255)
                                                                              CGTTCTGGTTGGTGGCGGCCTAGATCGCGTCGCGGTCCAGATCGACGCCGATGAAGACGATCTCCTGGCGCCGGTCGCCCCAGGGCTCGGCCCAGTTCCGG                             <  1:137399/101‑1 (MQ=255)
                                                                                                                                                                                                              
GCAAGGCGAACGACGACCTGCTGTCCAGAGCCCGCAGGCTGGCGGCGACGCATCGCCGTGGCCCGCCCGGTGTCGTGTCGTTCTGGTTGGTGGCGGCCTAGATCGC....................................................................................................  <  NC_014034/1328953‑1328848
...................................................................................................AGATCGCGTCGCGGTCCAGATCGACGCCGATGAAGACGATCTCCTGGCGCCGGTCGCCCCAGGGCTCGGCCCAGTTCCGGGCGATTTCGCGCTGCGCATCGGGATGC  >  NC_014034/2550162‑2550261

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG