New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395465	209 (1.330)	58 (0.370)	14/128	14.7	0.23	intergenic (+277/‑654)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1396099 =	182 (0.740)					intergenic (+911/‑20)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
Rejected: Position hash score below cutoff.

TCGGTGATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC................................................................................  >  NC_014034/1395421‑1395465 .................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTCATCT  >  NC_014034/1396099‑1396142                                              ||||||||||||||||||||||||||||||||||||                                             ctttgtctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGC                          <  2:1525627/91‑1 (MQ=0) ctttgtctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGC                          >  1:251713/11‑101 (MQ=0) ctttgtctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGC                          >  2:3477079/11‑101 (MQ=0) ctttggctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGC                          <  2:2635969/91‑1 (MQ=0)  tttgtctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCG                         >  2:4932815/10‑101 (MQ=0)   ttgtctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGT                        >  1:4937571/9‑101 (MQ=0)    tgtctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTG                       <  1:939925/94‑1 (MQ=0)    tgtctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTG                       <  2:10630/94‑1 (MQ=0)    tgtctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTG                       >  1:3125486/8‑101 (MQ=0)    tgtctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTG                       <  2:4218159/94‑1 (MQ=0)     ttctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGG                      <  2:4080269/95‑1 (MQ=0)     gtctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGG                      >  1:1172676/7‑101 (MQ=0)     gtctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGG                      <  2:3446395/95‑1 (MQ=0)     gtctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGG                      <  2:5025538/95‑1 (MQ=0)      tctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGA                     <  2:3547280/96‑1 (MQ=1)      gctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGA                     <  2:102103/96‑1 (MQ=1)       ctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGAT                    >  2:4073409/5‑101 (MQ=1)       ctgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGAT                    <  1:1861376/97‑1 (MQ=1)        tgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCTGCCTCGATCCGTTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  1:5002561/98‑1 (MQ=0)        tgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  2:4667301/98‑1 (MQ=1)        tgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  1:3169869/98‑1 (MQ=1)        tgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  2:2176019/98‑1 (MQ=1)        tgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  1:2386797/98‑1 (MQ=1)        tgcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  1:2058501/98‑1 (MQ=1)         gcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:2924219/99‑1 (MQ=1)         gcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:661636/99‑1 (MQ=1)         gcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                  >  2:1056044/3‑101 (MQ=1)         gcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  2:819353/99‑1 (MQ=1)         gcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGCGGATCG                  >  1:1170307/3‑101 (MQ=1)         gcGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTAAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                  >  2:2752502/3‑101 (MQ=1)         ctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTGAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  2:982697/99‑1 (MQ=1)           GCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTGAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAg                >  1:982807/1‑100 (MQ=1)           GCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  2:3901759/101‑1 (MQ=1)           GCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  2:1367452/101‑1 (MQ=1)           GCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCCAA                >  2:4469968/1‑101 (MQ=1)            CGGGCGCCCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  2:864997/101‑1 (MQ=0)              GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             <  1:1342214/101‑1 (MQ=1)              GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT             >  2:495815/1‑101 (MQ=1)                CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTg           <  1:44901/101‑2 (MQ=1)                CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTg           >  1:3784180/1‑100 (MQ=1)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTga          >  2:3487420/1‑99 (MQ=1)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTga          <  2:3994476/101‑3 (MQ=1)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTga          <  2:4002224/101‑3 (MQ=1)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTCCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTga          >  2:4176948/1‑99 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgat         <  2:1252050/101‑4 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgat         >  1:438672/1‑98 (MQ=1)                   TCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgatg        >  1:2409037/1‑97 (MQ=1)                   TCCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgatg        >  2:4358440/1‑97 (MQ=1)                    CCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgatga       >  1:4014724/1‑96 (MQ=1)                    CCCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgatga       >  2:2586279/1‑96 (MQ=1)                     CCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgatgac      <  1:602945/101‑7 (MQ=0)                     CCCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgatgac      <  1:4624231/101‑7 (MQ=0)                      CCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgatgacc     <  1:3656896/101‑8 (MQ=0)                      CCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgatgacc     >  1:617953/1‑94 (MQ=0)                      CCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgatgacc     <  1:4878672/101‑8 (MQ=0)                      CCCCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACTTgatgacc     >  1:3501137/1‑94 (MQ=0)                        CCGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgatgaccag   <  1:4596494/101‑10 (MQ=0)                         CGCGGGGGCGTGGATCGAAACTCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTgatgaccaga  <  2:2643391/101‑11 (MQ=0)                                              ||||||||||||||||||||||||||||||||||||                                             TCGGTGATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC................................................................................  >  NC_014034/1395421‑1395465 .................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTCATCT  >  NC_014034/1396099‑1396142 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG