New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395466	213 (1.320)	67 (0.410)	9/132	18.1	0.25	intergenic (+278/‑653)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1395899 =	183 (0.750)					intergenic (+711/‑220)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
Rejected: Position hash score below cutoff.

GGTGATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA...............................................................................  >  NC_014034/1395423‑1395466 ..............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGG  >  NC_014034/1395899‑1395943                                             ||||||||||||||||||||||||||||||||||                                              taaggccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTG                        <  1:1606329/91‑1 (MQ=0) taaggccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTG                        <  2:212484/91‑1 (MQ=0)  aaggccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGG                       <  1:108621/92‑1 (MQ=0)   aggccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGA                      >  1:2083580/9‑101 (MQ=0)    ggccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  1:28874/94‑1 (MQ=1)    ggccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGAT                     >  1:4833911/8‑101 (MQ=1)    ggccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  1:2028608/94‑1 (MQ=1)     gccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATC                    <  1:4574011/95‑1 (MQ=1)     gccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATC                    <  1:1988851/95‑1 (MQ=1)     gccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATC                    <  1:2483963/95‑1 (MQ=1)      ccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCG                   <  1:4752711/96‑1 (MQ=1)      ccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCG                   <  1:3778561/96‑1 (MQ=1)      ccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCG                   >  1:4553690/6‑101 (MQ=1)      ccggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCG                   <  1:4446630/96‑1 (MQ=1)       cggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGA                  <  1:490431/97‑1 (MQ=1)       cggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGA                  >  2:618979/5‑101 (MQ=1)        ggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGGGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 >  2:1945034/4‑101 (MQ=1)        ggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 <  2:4470856/98‑1 (MQ=1)         gtGGTCGCACCCCCAGCGGGGGCGTGGATCGAACCACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                <  1:4361551/99‑1 (MQ=0)          tGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               <  1:3168975/100‑1 (MQ=1)          tGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               <  1:3772024/100‑1 (MQ=1)          tGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               <  2:1546071/100‑1 (MQ=1)          tGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               <  2:2170493/100‑1 (MQ=1)          tGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               <  2:2790760/100‑1 (MQ=1)           cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt              <  2:664653/100‑2 (MQ=1)           GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt              >  1:4161174/1‑100 (MQ=1)           GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt              <  2:3598721/101‑2 (MQ=1)           GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt              <  1:3451392/101‑2 (MQ=1)           GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt              <  1:223518/101‑2 (MQ=1)            GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACta             <  1:4826273/101‑3 (MQ=1)            GTCGCCCCCCCCGCGGGGGCGTGGATCGAAACACCCTGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACta             <  2:4434227/101‑3 (MQ=0)             gCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAT            <  2:1057343/100‑1 (MQ=1)             TCGCTCCGCCCGCGGGGGCGTGGATCGAAACTCCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAT            <  2:4508980/101‑1 (MQ=0)             TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAT            >  2:310388/1‑101 (MQ=1)             TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAT            <  1:2016563/101‑1 (MQ=1)             TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAT            <  1:2871982/101‑1 (MQ=1)              CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATG           >  2:2544048/1‑101 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGC          >  2:1663262/1‑101 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGC          >  1:910194/1‑101 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGC          >  1:4978266/1‑101 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGC          >  1:2141749/1‑101 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGC          >  2:2400946/1‑101 (MQ=1)                CTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCt         <  2:4982795/101‑2 (MQ=1)                 cCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg        <  2:1410700/100‑3 (MQ=0)                 TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg        <  1:216669/101‑3 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg        >  1:1176760/1‑99 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg        >  1:4451178/1‑99 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg        >  1:4601225/1‑99 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg        >  1:4665167/1‑99 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg        >  1:3270682/1‑99 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg        <  1:2438192/101‑3 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCT.GAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtgg       >  2:2807018/1‑98 (MQ=0)                  CCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtgg       <  2:4805210/101‑4 (MQ=0)                  CCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtgg       <  2:4551078/101‑4 (MQ=0)                  CCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtgg       >  1:879297/1‑98 (MQ=0)                  CCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACTATGCtgg       >  1:4546155/1‑98 (MQ=0)                   CCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCTCCCCGCGGGGGCGTGGATCGAAACTATGCtggc      >  1:4306899/1‑97 (MQ=0)                    CCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggct     <  2:1590595/101‑6 (MQ=0)                    CCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggct     <  1:4903488/101‑6 (MQ=0)                    CCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggct     >  1:3863349/1‑96 (MQ=0)                     CCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctc    <  1:1605103/101‑7 (MQ=0)                     CCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctc    <  2:1431341/101‑7 (MQ=0)                      CCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctcg   <  1:3858343/101‑8 (MQ=0)                      CCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctcg   <  1:2772735/101‑8 (MQ=0)                      CCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctcg   <  1:1312843/101‑8 (MQ=0)                       CGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctcga  <  2:4872433/101‑9 (MQ=0)                       CGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctcga  <  1:4939798/101‑9 (MQ=0)                                             ||||||||||||||||||||||||||||||||||                                              GGTGATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA...............................................................................  >  NC_014034/1395423‑1395466 ..............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGG  >  NC_014034/1395899‑1395943 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG