New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395466	213 (1.320)	47 (0.290)	7/132	19.6	0.31	intergenic (+278/‑653)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1434547 =	0 (0.000)					intergenic (‑326/‑632)	RCAP_rcc01334/RCAP_rcc01335	hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

TCGGTGATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.............................................................................  >  NC_014034/1395421‑1395466 ................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAA  >  NC_014034/1434547‑1434589                                               ||||||||||||||||||||||||||||||||||                                            agcagcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCG                        >  2:3807962/11‑101 (MQ=0)  gcagcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGT                       <  2:2261171/92‑1 (MQ=0)   cagcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTG                      >  2:2234415/9‑101 (MQ=0)   cagcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTG                      <  2:189690/93‑1 (MQ=0)   cagcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTG                      >  1:2928173/9‑101 (MQ=0)    agcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGG                     <  1:82140/94‑1 (MQ=0)    agcggctGCGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGG                     <  1:3526510/94‑1 (MQ=0)     gcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCACCCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                    <  2:1661797/95‑1 (MQ=0)     gcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                    <  2:1302225/95‑1 (MQ=0)     gcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                    <  1:477855/95‑1 (MQ=0)      cggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  1:54187/96‑1 (MQ=1)      cggctGCGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  2:206686/96‑1 (MQ=0)       ggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATC                  >  2:3739807/5‑101 (MQ=1)       ggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGGGGTTC                  >  1:2638458/5‑101 (MQ=0)        gctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                 <  2:1961055/98‑1 (MQ=1)        gctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                 >  1:1007183/4‑101 (MQ=1)        gctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                 <  1:3621198/98‑1 (MQ=1)        gcgGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                 <  2:3585850/98‑1 (MQ=1)         ctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                <  2:2718213/99‑1 (MQ=1)         ctGCGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                <  1:1754332/99‑1 (MQ=1)          tGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               <  2:2101507/100‑1 (MQ=1)          tGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               <  2:4062006/100‑1 (MQ=1)          tGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               >  2:1840076/2‑101 (MQ=1)           ggGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              <  1:642809/99‑1 (MQ=1)           GCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              <  1:3846625/101‑1 (MQ=1)           GCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              >  1:1266709/1‑101 (MQ=1)            CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             <  2:3173527/101‑1 (MQ=1)             GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc            <  1:3701546/101‑2 (MQ=1)             GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc            >  1:4112736/1‑100 (MQ=1)              GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACcc           <  2:3134417/101‑3 (MQ=1)               TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACccc          <  1:2411224/101‑4 (MQ=1)               TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACccc          >  1:2185868/1‑98 (MQ=1)               TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACccc          <  1:4543318/101‑4 (MQ=1)               TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACccc          <  1:4517310/101‑4 (MQ=1)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACcccgc        <  1:3928218/101‑6 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACcccccg       >  2:908102/1‑95 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCG       >  1:640531/1‑101 (MQ=1)                   TCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGg      <  2:4644622/101‑2 (MQ=1)                   TCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGg      >  1:2280190/1‑100 (MQ=1)                    CCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgc     >  2:4398618/1‑99 (MQ=1)                    CCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgc     <  2:974032/101‑3 (MQ=1)                    CCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgc     >  2:3670788/1‑99 (MQ=1)                    CCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgc     >  1:780972/1‑99 (MQ=1)                     CCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcg    >  2:3079507/1‑98 (MQ=0)                      CCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgt   >  1:2193081/1‑97 (MQ=0)                       CCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtc  <  2:3830578/101‑6 (MQ=0)                       CCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtc  <  1:432345/101‑6 (MQ=0)                                               ||||||||||||||||||||||||||||||||||                                            TCGGTGATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.............................................................................  >  NC_014034/1395421‑1395466 ................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAA  >  NC_014034/1434547‑1434589 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG